RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 VTCN1Q7Z7D3 282 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 CMTM8Q8IZV2 173 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 L3MBTL4Q8NA19 623 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 CDC26Q8NHZ8 85 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 PPP1R14BQ96C90 147 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 FRG2BQ96QU4 278 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 MYOCQ99972 504 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 BBS2Q9BXC9 721 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 TRIT1Q9H3H1 467 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 SUV39H2Q9H5I1 410 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 ZDHHC6Q9H6R6 413 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 FAM8A1Q9UBU6 413 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 ERVK-11Q9UQG0 969 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 SH3BP1Q9Y3L3 701 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 CLIC1O00299 241 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 FPGTO14772 594 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 NDUFS2O75306 463 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 CCDC159P0C7I6 412 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 ZNF12P17014 697 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 ENGP17813 658 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 EFNA1P20827 205 aaPredicted RBP11.46□□□□□ -0.57
CD44-209ENST00000433892 HOXD10P28358 340 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 MAPK1P28482 360 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 HNMTP50135 292 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 CHIT1Q13231 466 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 RAB33AQ14088 237 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 SF1Q15637 639 aaKnown RBP11.46□□□□□ -0.57
CD44-209ENST00000433892 ZC3H12BQ5HYM0 836 aaKnown RBP11.46□□□□□ -0.57
CD44-209ENST00000433892 OR2T5Q6IEZ7 315 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 GAREM2Q75VX8 874 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 SYT12Q8IV01 421 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 FAM9CQ8IZT9 166 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 CENPSQ8N2Z9 138 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 ABHD11Q8NFV4 315 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 OR2T29Q8NH02 315 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 FIBINQ8TAL6 211 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 MCOLN3Q8TDD5 553 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 TRUB1Q8WWH5 349 aaKnown RBP11.46□□□□□ -0.57
CD44-209ENST00000433892 TMEM169Q96HH4 297 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 DPH2Q9BQC3 489 aaPredicted RBP11.46□□□□□ -0.57
CD44-209ENST00000433892 IL1RAPQ9NPH3 570 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 MRPL17Q9NRX2 175 aaKnown RBP11.46□□□□□ -0.57
CD44-209ENST00000433892 ERVK-18Q9QC07 812 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 ENPP5Q9UJA9 477 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 TMED5Q9Y3A6 229 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 NAALAD2Q9Y3Q0 740 aa11.46□□□□□ -0.57
CD44-209ENST00000433892 PRRC2BQ5JSZ5 2229 aaKnown RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 IGLV3-16A0A075B6K0 115 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 ZNF99A8MXY4 864 aaPredicted RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 CFAP99D6REC4 459 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 BOLA2-SMG1P6H3BVE0 249 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 NRG2O14511 850 aaPredicted RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 NUAK1O60285 661 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 CBFA2T3O75081 653 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 KCNK5O95279 499 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 PARNO95453 639 aaKnown RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 MYCP01106 439 aaPredicted RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 UGT2B4P06133 528 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 C1SP09871 688 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 OCM2P0CE71 109 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 OCMP0CE72 109 aaPredicted RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 ITGAMP11215 1152 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 GJA1P17302 382 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 PRPH2P23942 346 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 CLK3P49761 638 aaKnown RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 PTPN5P54829 565 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 PHEXP78562 749 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 VLDLRP98155 873 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 ITGADQ13349 1161 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 IL18R1Q13478 541 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 CTF1Q16619 201 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 DUOXA1Q1HG43 343 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 MPPE1Q53F39 396 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 LAIR1Q6GTX8 287 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 TTC23LQ6PF05 361 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 B3GNT8Q7Z7M8 397 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 SERPINA11Q86U17 422 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 TCAIMQ8N3R3 496 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 FBLIM1Q8WUP2 373 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 FAR1Q8WVX9 515 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 NELL1Q92832 810 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 ECHDC3Q96DC8 303 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 HHIPQ96QV1 700 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 MTERF1Q99551 399 aaKnown RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 SMG9Q9H0W8 520 aaKnown RBP11.46□□□□□ -0.58
CD44-209ENST00000433892 DNAJC11Q9NVH1 559 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 KLHL42Q9P2K6 505 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 DOLKQ9UPQ8 538 aa11.46□□□□□ -0.58
CD44-209ENST00000433892 FKBP9O95302 570 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 CPSF4O95639 269 aaKnown RBP11.45□□□□□ -0.58
CD44-209ENST00000433892 ATP1B2P14415 290 aaPredicted RBP11.45□□□□□ -0.58
CD44-209ENST00000433892 PRPS1L1P21108 318 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 EPHA2P29317 976 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 HLA-FP30511 346 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 OPRL1P41146 370 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 MAP2K4P45985 399 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 SPINT3P49223 89 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 ARHGDIAP52565 204 aa11.45□□□□□ -0.58
CD44-209ENST00000433892 DDX39BQ13838 428 aaKnown RBP11.45□□□□□ -0.58
CD44-209ENST00000433892 GBX1Q14549 363 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms