RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PCDHA9Q9Y5H5 950 aa25.64■■□□□ 1.69
LDB1-202ENST00000425280 H3BNX3 289 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 RPN2P04844 631 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 GABRG2P18507 467 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 TPMTP51580 245 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 DDX39BQ13838 428 aaKnown RBP25.63■■□□□ 1.69
LDB1-202ENST00000425280 CAPRIN2Q6IMN6 1127 aaKnown RBP25.63■■□□□ 1.69
LDB1-202ENST00000425280 RNF111Q6ZNA4 994 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 GLB1L3Q8NCI6 653 aaPredicted RBP25.63■■□□□ 1.69
LDB1-202ENST00000425280 WDR34Q96EX3 536 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 MSANTD3Q96H12 275 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 CLMPQ9H6B4 373 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 SUFUQ9UMX1 484 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 WDR37Q9Y2I8 494 aa25.63■■□□□ 1.69
LDB1-202ENST00000425280 CACNB4O00305 520 aaPredicted RBP25.62■■□□□ 1.69
LDB1-202ENST00000425280 LATO43561 262 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 PRPS2P11908 318 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 VHLP40337 213 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 TRAP1Q12931 704 aaKnown RBP25.62■■□□□ 1.69
LDB1-202ENST00000425280 PYCR3Q53H96 274 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 ADNP2Q6IQ32 1131 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 OR7G3Q8NG95 312 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 TMEM125Q96AQ2 219 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 APOLD1Q96LR9 279 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 OSGEPL1Q9H4B0 414 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 PLEKHM1Q9Y4G2 1056 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 NPPAP01160 153 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 ERGP11308 486 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 MAPK1P28482 360 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 SKIV2LQ15477 1246 aaKnown RBP25.62■■□□□ 1.69
LDB1-202ENST00000425280 C6orf10Q5SRN2 563 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 ATG9BQ674R7 924 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 DNAJB14Q8TBM8 379 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 FCRL1Q96LA6 429 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 TRIM8Q9BZR9 551 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 VPS29Q9UBQ0 182 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 MOSPD1Q9UJG1 213 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 NDRG2Q9UN36 371 aaKnown RBP25.62■■□□□ 1.69
LDB1-202ENST00000425280 KCNK6Q9Y257 313 aa25.62■■□□□ 1.69
LDB1-202ENST00000425280 TRIOBPQ9H2D6 2365 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 POM121BA6NF01 834 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 PI15O43692 258 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 C1GALT1C1LP0DN25 315 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 HSD3B1P14060 373 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 ACPPP15309 386 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 SDC1P18827 310 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 HSD3B2P26439 372 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 CLDN2P57739 230 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 MRPS22P82650 360 aaKnown RBP25.61■■□□□ 1.69
LDB1-202ENST00000425280 FAM174BQ3ZCQ3 159 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 TMEM31Q5JXX7 168 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 DUS1LQ6P1R4 473 aaKnown RBP25.61■■□□□ 1.69
LDB1-202ENST00000425280 DHDDSQ86SQ9 333 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 TRIM69Q86WT6 500 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 KIAA2013Q8IYS2 634 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 SETD7Q8WTS6 366 aaKnown RBP25.61■■□□□ 1.69
LDB1-202ENST00000425280 SLC5A11Q8WWX8 675 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 NRTNQ99748 197 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 TRIT1Q9H3H1 467 aaKnown RBP25.61■■□□□ 1.69
LDB1-202ENST00000425280 BRF2Q9HAW0 419 aa25.61■■□□□ 1.69
LDB1-202ENST00000425280 PRR19A6NJB7 356 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 PCNAP12004 261 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 TACR1P25103 407 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 CLDN8P56748 225 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 MED27Q6P2C8 311 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 DLEU7Q6UYE1 221 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 C2orf73Q8N5S3 287 aaPredicted RBP25.6■■□□□ 1.69
LDB1-202ENST00000425280 SCARF2Q96GP6 870 aaPredicted RBP25.6■■□□□ 1.69
LDB1-202ENST00000425280 EHD1Q9H4M9 534 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 SLC2A4RGQ9NR83 387 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 A0A1W2PPC1 479 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 MAGEB17A8MXT2 336 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 SOX1O00570 391 aaPredicted RBP25.6■■□□□ 1.69
LDB1-202ENST00000425280 SRFP11831 508 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 HSD17B1P14061 328 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 SLBPQ14493 270 aaKnown RBP eCLIP25.6■■□□□ 1.69
LDB1-202ENST00000425280 RABL3Q5HYI8 236 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 SPANXN4Q5MJ08 99 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 PRAMEF14Q5SWL7 426 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 THEMIS2Q5TEJ8 643 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 PRAMEF13Q5VWM6 474 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 NOXRED1Q6NXP6 359 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 OR2T34Q8NGX1 318 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 HUS1BQ8NHY5 278 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 SLC13A3Q8WWT9 602 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 INSM2Q96T92 566 aaPredicted RBP25.6■■□□□ 1.69
LDB1-202ENST00000425280 MENTQ9BUN1 341 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 EFCAB11Q9BUY7 163 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 FGF22Q9HCT0 170 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 GEMIN8Q9NWZ8 242 aaKnown RBP25.6■■□□□ 1.69
LDB1-202ENST00000425280 GPSM3Q9Y4H4 160 aa25.6■■□□□ 1.69
LDB1-202ENST00000425280 HOXC4P09017 264 aaPredicted RBP25.59■■□□□ 1.69
LDB1-202ENST00000425280 TFF2Q03403 129 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 ARHGAP19Q14CB8 494 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 NXPE4Q6UWF7 544 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 LCTLQ6UWM7 567 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 TBC1D21Q8IYX1 336 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 DENND6BQ8NEG7 585 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 HMGB4Q8WW32 186 aa25.59■■□□□ 1.69
LDB1-202ENST00000425280 TSSK3Q96PN8 268 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms