RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RPS27LQ71UM5 84 aaKnown RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 C17orf64Q86WR6 236 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 KLHDC8AQ8IYD2 350 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 CHCHD4Q8N4Q1 142 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 C2orf73Q8N5S3 287 aaPredicted RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 TBC1D19Q8N5T2 526 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 ZNF781Q8N8C0 355 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 OR6C4Q8NGE1 309 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 OR10G6Q8NH81 332 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 HMGCLL1Q8TB92 370 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 BCAS4Q8TDM0 211 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 SLC5A11Q8WWX8 675 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 NSUN5Q96P11 429 aaKnown RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 RTKNQ9BST9 563 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 NPHS2Q9NP85 383 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 MARCOQ9UEW3 520 aaPredicted RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 ICKQ9UPZ9 632 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 ENTPD2Q9Y5L3 495 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 LRP4O75096 1905 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 PIPSLA2A3N6 862 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 GSAPA4D1B5 854 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 TRPC5OSA6NMA1 111 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 MATN2O00339 956 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 AZIN1O14977 448 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 FAM107AO95990 144 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 KRT6AP02538 564 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 KRT6BP04259 564 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 UROSP10746 265 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ERGP11308 486 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ENGP17813 658 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 CXCR2P25025 360 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 MPSTP25325 297 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 GRK3P35626 688 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 FASLGP48023 281 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 KRT6CP48668 564 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 PHEXP78562 749 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ABATP80404 500 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 CHIT1Q13231 466 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 LAPTM5Q13571 262 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 FASTKQ14296 549 aaKnown RBP13.73□□□□□ -0.21
SKA1-202ENST00000398452 KIR2DS3Q14952 304 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 SF1Q15637 639 aaKnown RBP13.73□□□□□ -0.21
SKA1-202ENST00000398452 CSRP2Q16527 193 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 OGFOD3Q6PK18 319 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ADCK2Q7Z695 626 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 TMPRSS11BQ86T26 416 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 GATAD2AQ86YP4 633 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 SLC25A45Q8N413 288 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ANKS4BQ8N8V4 417 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 METTL6Q8TCB7 284 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 AGAP11Q8TF27 550 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 UBE2E3Q969T4 207 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 REPS1Q96D71 796 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 MOCOSQ96EN8 888 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 AHCYL2Q96HN2 611 aaKnown RBP13.73□□□□□ -0.21
SKA1-202ENST00000398452 CCT8L2Q96SF2 557 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ELAC2Q9BQ52 826 aaKnown RBP13.73□□□□□ -0.21
SKA1-202ENST00000398452 NTMT1Q9BV86 223 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ACAT2Q9BWD1 397 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 SGPP1Q9BX95 441 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 RABEP2Q9H5N1 569 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 UCK1Q9HA47 277 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 FSCN3Q9NQT6 498 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 INTS7Q9NVH2 962 aaKnown RBP13.73□□□□□ -0.21
SKA1-202ENST00000398452 TAC3Q9UHF0 121 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 TRPS1Q9UHF7 1281 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 SNX6Q9UNH7 406 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 TRAF6Q9Y4K3 522 aa13.73□□□□□ -0.21
SKA1-202ENST00000398452 ZFC3H1O60293 1989 aaKnown RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 LILRA5A6NI73 299 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 C2orf74A8MZ97 194 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 NOBOXO60393 691 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 UGDHO60701 494 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 OR4F21O95013 312 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 CHRM5P08912 532 aaPredicted RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 HRH2P25021 359 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 HNF4AP41235 474 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 CCR10P46092 362 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 DUSP3P51452 185 aaPredicted RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 DAB2P98082 770 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 NR0B2Q15466 257 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 LIPJQ5W064 366 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 SPATA21Q7Z572 469 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 LSMEM2Q8N112 164 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 KRT78Q8N1N4 520 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 MINDY1Q8N5J2 469 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 CDYL2Q8N8U2 506 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 GPR156Q8NFN8 814 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 OR4F6Q8NGB9 312 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 OR4C6Q8NH72 309 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 NETO1Q8TDF5 533 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 SAP25Q8TEE9 199 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 JPH3Q8WXH2 748 aaPredicted RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 SORT1Q99523 831 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 EFCAB11Q9BUY7 163 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 ELOVL6Q9H5J4 265 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 ZNF395Q9H8N7 513 aaPredicted RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 ZBTB26Q9HCK0 441 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 MRPS30Q9NP92 439 aaKnown RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 PNPOQ9NVS9 261 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms