RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ACTL8Q9H568 366 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 FARSBQ9NSD9 589 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 SCHIP1Q9P0W5 487 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ADGRE2Q9UHX3 823 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 INTS6Q9UL03 887 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ZFC3H1O60293 1989 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 A0A1B0GTW7 788 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 SH3PXD2BA1X283 911 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 LINC01387J3KSC0 135 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ANKRD28O15084 1053 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 PRPS2P11908 318 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CTSOP43234 321 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 SELPLGQ14242 412 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 RNF165Q6ZSG1 346 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 DET1Q7L5Y6 550 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ZDHHC13Q8IUH4 622 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 MED30Q96HR3 178 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 COQ7Q99807 217 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 TBCDQ9BTW9 1192 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 BRD9Q9H8M2 597 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 VAPAQ9P0L0 249 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ST14Q9Y5Y6 855 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 MYO9BQ13459 2157 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 HIDE1A8MVS5 230 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CBFA2T3O75081 653 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 TRMUO75648 421 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 RSL1D1O76021 490 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 SCELO95171 688 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 GNAO1P09471 354 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CYP2A6P11509 494 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 BMPR1AP36894 532 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ALDH3B2P48448 385 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 TEAD2Q15562 447 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF600Q6ZNG1 722 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 GPR65Q8IYL9 337 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 TMEM132CQ8N3T6 1108 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 NAT16Q8N8M0 369 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF557Q8N988 423 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CLHC1Q8NHS4 586 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 GTF2H4Q92759 462 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ARMC5Q96C12 935 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CPEB1Q9BZB8 566 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 RBM38Q9H0Z9 239 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CFL2Q9Y281 166 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CEPT1Q9Y6K0 416 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ACOX3O15254 700 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 NOL3O60936 208 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 RNGTTO60942 597 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ERN1O75460 977 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 BCKDHAP12694 445 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 CDH2P19022 906 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 SLC5A2P31639 672 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 MTHFRP42898 656 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 HNMTP50135 292 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 PSRC1Q6PGN9 363 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ELMSAN1Q6PJG2 1045 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 GCNT7Q6ZNI0 430 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 DPY19L3Q6ZPD9 716 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 FKBP9P1Q75LS8 142 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ZSWIM9Q86XI8 627 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 OFCC1Q8IZS5 231 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 BPIFB1Q8TDL5 484 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 POP5Q969H6 163 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 VWCEQ96DN2 955 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 FBXL20Q96IG2 436 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ITCHQ96J02 903 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 MAGEB10Q96LZ2 347 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 YTHDF1Q9BYJ9 559 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 TLR9Q9NR96 1032 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 DNAJC11Q9NVH1 559 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ASIC5Q9NY37 505 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 B4GALT6Q9UBX8 382 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 PDE10AQ9Y233 779 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 HS3ST2Q9Y278 367 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 CCL27Q9Y4X3 112 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 MPC1LP0DKB6 136 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 PFKLP17858 780 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 EEF1B2P24534 225 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 MAP4P27816 1152 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 CCR7P32248 378 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 TTKP33981 857 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 SPINT3P49223 89 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 CDK9P50750 372 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 IST1P53990 364 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 PPP2R2BQ00005 443 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 DAG1Q14118 895 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 PGS1Q32NB8 556 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 MRPL43Q8N983 215 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ING5Q8WYH8 240 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 USP7Q93009 1102 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 TMBIM1Q969X1 311 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 COX4I2Q96KJ9 171 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF583Q96ND8 569 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 SLC12A9Q9BXP2 914 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 GORASP2Q9H8Y8 452 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 SATB2Q9UPW6 733 aa9.38□□□□□ -0.91
COL6A3-204ENST00000392003 MRPS23Q9Y3D9 190 aaKnown RBP9.38□□□□□ -0.91
COL6A3-204ENST00000392003 CXorf51AA0A1B0GTR3 108 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 C16orf96A6NNT2 1141 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 AGAP14A8MT82 685 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms