RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TOR1AIP1Q5JTV8 583 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ASPGQ86U10 573 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ADGRG2Q8IZP9 1017 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DACH2Q96NX9 599 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 SEC14L3Q9UDX4 400 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 PROM1O43490 865 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 RFPL1O75677 317 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 IL12BP29460 328 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 KCNC1P48547 511 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 METTL25Q8N6Q8 603 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 ACVR1CQ8NER5 493 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 TSSK3Q96PN8 268 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 KCNC2Q96PR1 638 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 APOOQ9BUR5 198 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 NECTIN3Q9NQS3 549 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 APOBEC3BQ9UH17 382 aaKnown RBP13.27□□□□□ -0.28
LDLR-201ENST00000252444 A0A1W2PRB8 838 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 FAM20BO75063 409 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 SLC7A2P52569 658 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 ACY1Q03154 408 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 CYP4F3Q08477 520 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 PCLAFQ15004 111 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 IFI44LQ53G44 452 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 PRRT3Q5FWE3 981 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 AFMIDQ63HM1 303 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 SLC29A4Q7RTT9 530 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 ARFGAP1Q8N6T3 406 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 B4GALNT2Q8NHY0 566 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 ZNF184Q99676 751 aaPredicted RBP13.27□□□□□ -0.28
LDLR-201ENST00000252444 RACGAP1Q9H0H5 632 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 MEAF6Q9HAF1 191 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 SMOXQ9NWM0 555 aa13.27□□□□□ -0.28
LDLR-201ENST00000252444 AKAP8O43823 692 aaKnown RBP13.27□□□□□ -0.29
LDLR-201ENST00000252444 TEAD1P28347 426 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 CLK1P49759 484 aaKnown RBP13.27□□□□□ -0.29
LDLR-201ENST00000252444 RPS7P62081 194 aaKnown RBP13.27□□□□□ -0.29
LDLR-201ENST00000252444 UBAP2LQ14157 1087 aaKnown RBP13.27□□□□□ -0.29
LDLR-201ENST00000252444 FAM220AQ7Z4H9 259 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 NPAS3Q8IXF0 933 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 KIAA1143Q96AT1 154 aaPredicted RBP13.27□□□□□ -0.29
LDLR-201ENST00000252444 OR51F1A6NGY5 319 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 TNFRSF10CO14798 259 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 MID1O15344 667 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 NDUFS4O43181 175 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 TAS2R41P59536 307 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 SLC44A4Q53GD3 710 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 PDSS1Q5T2R2 415 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 LCN1P1Q5VSP4 162 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 STK32CQ86UX6 486 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 OR2L2Q8NH16 312 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 ARRDC2Q8TBH0 407 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 SLC38A4Q969I6 547 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 ASB16Q96NS5 453 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 SEPHS2Q99611 448 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 DHRS4Q9BTZ2 278 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 BRINP2Q9C0B6 783 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 TAC3Q9UHF0 121 aa13.27□□□□□ -0.29
LDLR-201ENST00000252444 ZCWPW2A0A1B0GU75 182 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 FAM86C2PA6NEL3 165 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 LDOC1O95751 146 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 HNRNPH1P31943 449 aaKnown RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 PRLHRP49683 370 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 PLIN5Q00G26 463 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 MBTPS1Q14703 1052 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 NFATC4Q14934 902 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 SHHQ15465 462 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 NADSYN1Q6IA69 706 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 GRHL2Q6ISB3 625 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 IZUMO2Q6UXV1 221 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ALYREFQ86V81 257 aaKnown RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 OR5P2Q8WZ92 322 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 NR1H4Q96RI1 486 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 TMEM79Q9BSE2 394 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ALG2Q9H553 416 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 SLCO1B3Q9NPD5 702 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ARHGEF3Q9NR81 526 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 WWP2O00308 870 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 FOXN2P32314 431 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 BDKRB1P46663 353 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 GALK1P51570 392 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 CCR5P51681 352 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 MTTPP55157 894 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.26□□□□□ -0.295e-6■□□□□ 10.9
LDLR-201ENST00000252444 PTCHD3Q3KNS1 767 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 RBM20Q5T481 1227 aaKnown RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 PLEKHM3Q6ZWE6 761 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ZNF786Q8N393 782 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 REXO5Q96IC2 774 aaKnown RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 MCMBPQ9BTE3 642 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ACAT2Q9BWD1 397 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 KLHL3Q9UH77 587 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 HIDE1A8MVS5 230 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 CCL22O00626 93 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 STX11O75558 287 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 TIMP2P16035 220 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 GRIA3P42263 894 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 EPHA5P54756 1037 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 IRF9Q00978 393 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 FADDQ13158 208 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 DNAJC14Q6Y2X3 702 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms