RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TUBA3EQ6PEY2 450 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 NPNTQ6UXI9 565 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 MICALCLQ6ZW33 695 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 CCDC71Q8IV32 467 aaPredicted RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 C2orf73Q8N5S3 287 aaPredicted RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 PLD5Q8N7P1 536 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 OR4K2Q8NGD2 314 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 RMND5BQ96G75 393 aaPredicted RBP13.81□□□□□ -0.2
CLN3-249ENST00000636685 SCMH1Q96GD3 660 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 MRGPRX2Q96LB1 330 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 RNF157Q96PX1 679 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 ERGIC2Q96RQ1 377 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 ZNF700Q9H0M5 742 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 TEKT2Q9UIF3 430 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 HRH3Q9Y5N1 445 aa13.81□□□□□ -0.2
CLN3-249ENST00000636685 IGLV3-12A0A075B6K2 115 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 FAM237BA0A1B0GVD1 139 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 HYKKA2RU49 373 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 FBLP22087 321 aaKnown RBP13.8□□□□□ -0.2
CLN3-249ENST00000636685 TAS2R40P59535 323 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 XIAPP98170 497 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 OR1C1Q15619 314 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 SLC1A5Q15758 541 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 ZC3H12BQ5HYM0 836 aaKnown RBP13.8□□□□□ -0.2
CLN3-249ENST00000636685 RNFT1Q5M7Z0 435 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 WASHC2DQ5SRD0 308 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 E4F1Q66K89 784 aaPredicted RBP13.8□□□□□ -0.2
CLN3-249ENST00000636685 SPINK14Q6IE38 97 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 FIGLAQ6QHK4 219 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 CD163Q86VB7 1156 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 MAP7D3Q8IWC1 876 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 TBC1D21Q8IYX1 336 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 IMMP1LQ96LU5 166 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 TEKT5Q96M29 485 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 PWWP2AQ96N64 755 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 COPS8Q99627 209 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 GPATCH1Q9BRR8 931 aaKnown RBP13.8□□□□□ -0.2
CLN3-249ENST00000636685 YIPF2Q9BWQ6 316 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 ISCUQ9H1K1 167 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 ENAMQ9NRM1 1142 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.8□□□□□ -0.2
CLN3-249ENST00000636685 POLG2Q9UHN1 485 aa13.8□□□□□ -0.2
CLN3-249ENST00000636685 LOC102723996A0A087X1L8 192 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 RCCD1A6NED2 376 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 LRRC53A6NM62 1247 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 AGAP14A8MT82 685 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 CFAP99D6REC4 459 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 KLK8O60259 260 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 EPOP01588 193 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 TPOP07202 933 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 HEXBP07686 556 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 ICAM2P13598 275 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 NFKB1P19838 968 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 PTPN3P26045 913 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 ACADLP28330 430 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 PCSK6P29122 969 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 PTGER1P34995 402 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 CD96P40200 585 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 TNNT3P45378 269 aaPredicted RBP13.79□□□□□ -0.2
CLN3-249ENST00000636685 AP2B1P63010 937 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 FASTKQ14296 549 aaKnown RBP13.79□□□□□ -0.2
CLN3-249ENST00000636685 PDK1Q15118 436 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 ACER2Q5QJU3 275 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 PRMT9Q6P2P2 845 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 GALNTL5Q7Z4T8 443 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 TAX1BP1Q86VP1 789 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 ZZZ3Q8IYH5 903 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 RPRMLQ8N4K4 120 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 IPMKQ8NFU5 416 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 FAM57AQ8TBR7 257 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 ENOX1Q8TC92 643 aaKnown RBP13.79□□□□□ -0.2
CLN3-249ENST00000636685 RAPGEF5Q92565 580 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 MBD6Q96DN6 1003 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 OXNAD1Q96HP4 312 aaPredicted RBP13.79□□□□□ -0.2
CLN3-249ENST00000636685 OLFM3Q96PB7 478 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 THAP2Q9H0W7 228 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 CLEC4MQ9H2X3 399 aaPredicted RBP13.79□□□□□ -0.2
CLN3-249ENST00000636685 SLC24A3Q9HC58 644 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 L3MBTL1Q9Y468 752 aa13.79□□□□□ -0.2
CLN3-249ENST00000636685 ZNF407Q9C0G0 2248 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 MYO1FO00160 1098 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 CTSVO60911 334 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 LY6G6DO95868 133 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 C8BP07358 591 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 CD46P15529 392 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 KDELR1P24390 212 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 PKLRP30613 574 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 CDKN1CP49918 316 aaPredicted RBP13.78□□□□□ -0.2
CLN3-249ENST00000636685 EFNA3P52797 238 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 BRD3Q15059 726 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 TMEM211Q6ICI0 200 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 FRMPD2BQ6IN97 320 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 NAPRTQ6XQN6 538 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 CLYBLQ8N0X4 340 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 CLDN19Q8N6F1 224 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 LINC01555Q8NAE3 123 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 ACRBPQ8NEB7 543 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 OR5K2Q8NHB8 316 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 RND1Q92730 232 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms