RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GLB1L3Q8NCI6 653 aaPredicted RBP10.77□□□□□ -0.68
CLN3-244ENST00000636147 OR10G2Q8NGC3 310 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 OR2T11Q8NH01 316 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 ATOH8Q96SQ7 321 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 TINF2Q9BSI4 451 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 POLR2J2Q9GZM3 115 aaKnown RBP10.77□□□□□ -0.68
CLN3-244ENST00000636147 NUFIP1Q9UHK0 495 aaKnown RBP10.77□□□□□ -0.68
CLN3-244ENST00000636147 ATP6V1HQ9UI12 483 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 KCNH4Q9UQ05 1017 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 SLC9A8Q9Y2E8 581 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 PCDHB5Q9Y5E4 795 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 ANKRD34BA5PLL1 514 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 NOS1APO75052 506 aaPredicted RBP10.77□□□□□ -0.69
CLN3-244ENST00000636147 C9P02748 559 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 TNFRSF1BP20333 461 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 RPIAP49247 311 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 GPR15P49685 360 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 RACK1P63244 317 aaKnown RBP10.77□□□□□ -0.69
CLN3-244ENST00000636147 ZNF45Q02386 682 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 NPRL3Q12980 569 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 RNASE12Q5GAN4 147 aaKnown RBP10.77□□□□□ -0.69
CLN3-244ENST00000636147 CADM2Q8N3J6 435 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 GRPEL2Q8TAA5 225 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 SH3RF2Q8TEC5 729 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 TMEM40Q8WWA1 233 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 FCGR1BQ92637 280 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 TANKQ92844 425 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 BTN2A3PQ96KV6 586 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 ZNF583Q96ND8 569 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 TMLHEQ9NVH6 421 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 MKLN1Q9UL63 735 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 SNX7Q9UNH6 387 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 LYVE1Q9Y5Y7 322 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 GON4LQ3T8J9 2241 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 AGAP5A6NIR3 686 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 PLK4O00444 970 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 HAT1O14929 419 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 PAPSS2O95340 614 aaPredicted RBP10.77□□□□□ -0.69
CLN3-244ENST00000636147 PRAMEF1O95521 474 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 PSMD8P48556 350 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 NFKB2Q00653 900 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 CREMQ03060 361 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 STARD3Q14849 445 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 XKR6Q5GH73 641 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 OTUD1Q5VV17 481 aaPredicted RBP10.77□□□□□ -0.69
CLN3-244ENST00000636147 CXCL17Q6UXB2 119 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 MBOAT1Q6ZNC8 495 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 SERPINA9Q86WD7 417 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 OR8J3Q8NGG0 315 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 OR2B2Q9GZK3 357 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 MMP28Q9H239 520 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 NMUR1Q9HB89 426 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 ACOT13Q9NPJ3 140 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 ING3Q9NXR8 418 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 LRFN2Q9ULH4 789 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 PCDHGA10Q9Y5H3 936 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 CLCA3PQ9Y6N3 262 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 SHROOM3Q8TF72 1996 aa10.77□□□□□ -0.69
CLN3-244ENST00000636147 A0A0D9SEW6 157 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 ARL5CA6NH57 179 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CXCL11O14625 94 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 DNAJB5O75953 348 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 NPPAP01160 153 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CD52P31358 61 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CASP3P42574 277 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CRYBB1P53674 252 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 IL10RBQ08334 325 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 SPATS1Q496A3 300 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 DUSP28Q4G0W2 176 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 BCL7AQ4VC05 210 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 RNF219Q5W0B1 726 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 PM20D1Q6GTS8 502 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 LGI4Q8N135 537 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 RNFT2Q96EX2 444 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 C11orf84Q9BUA3 381 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 CCDC177Q9NQR7 707 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 PRDM5Q9NQX1 630 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 MAP4K5Q9Y4K4 846 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 FAM172BPA6NC97 362 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 DLGAP1O14490 977 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CCNDBP1O95273 360 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 JUNBP17275 347 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 HTR2BP41595 481 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 ABHD18Q0P651 414 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 IL18Q14116 193 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 XAF1Q6GPH4 301 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 MZT2BQ6NZ67 158 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 KRT74Q7RTS7 529 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 C16orf62Q7Z3J2 963 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 PARP16Q8N5Y8 322 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 VANGL1Q8TAA9 524 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 ZNF382Q96SR6 550 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 INPP5KQ9BT40 448 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 ASPNQ9BXN1 380 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 ZNF717Q9BY31 904 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 RNF167Q9H6Y7 350 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CACYBPQ9HB71 228 aaKnown RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 MIEF1Q9NQG6 463 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 RHCGQ9UBD6 479 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 TRPC4Q9UBN4 977 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms