RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 THRAP10827 490 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 CPA3P15088 417 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 CHN1P15882 459 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 CYP2A7P20853 494 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 CCKBRP32239 447 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 SERPINB4P48594 390 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 C3orf38Q5JPI3 329 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.5□□□□□ -0.09
TRIM28-207ENST00000597136 HHATQ5VTY9 493 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 ZYG11AQ6WRX3 759 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 FRA10AC1Q70Z53 315 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 ARHGAP22Q7Z5H3 698 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 AMIGO1Q86WK6 493 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 FBXO15Q8NCQ5 510 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-207ENST00000597136 MCOLN3Q8TDD5 553 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 EXT2Q93063 718 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 TMEM74Q96NL1 305 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 SPHK1Q9NYA1 384 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 UTP6Q9NYH9 597 aaKnown RBP14.5□□□□□ -0.09
TRIM28-207ENST00000597136 COPG2Q9UBF2 871 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 POLG2Q9UHN1 485 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 SATB2Q9UPW6 733 aa14.5□□□□□ -0.09
TRIM28-207ENST00000597136 SUPT3HB4E1H0 165 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 DLX3O60479 287 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 SUPT3HO75486 399 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 MYL2P10916 166 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 TAC1P20366 129 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 MAP4P27816 1152 aaKnown RBP14.49□□□□□ -0.09
TRIM28-207ENST00000597136 CLPPQ16740 277 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-207ENST00000597136 FOXR1Q6PIV2 292 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 PLXDC1Q8IUK5 500 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 DCUN1D3Q8IWE4 304 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 LINC01555Q8NAE3 123 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 PRR11Q96HE9 360 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-207ENST00000597136 MAP3K3Q99759 626 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 PAIP2Q9BPZ3 127 aaKnown RBP14.49□□□□□ -0.09
TRIM28-207ENST00000597136 TMEM121BQ9BXQ6 578 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-207ENST00000597136 TRIM54Q9BYV2 358 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 RAB33BQ9H082 229 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 CD274Q9NZQ7 290 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 EPHA6Q9UF33 1036 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 MID2Q9UJV3 735 aa14.49□□□□□ -0.09
TRIM28-207ENST00000597136 MN1Q10571 1320 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-207ENST00000597136 IGHV5-51A0A0C4DH38 117 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 SMIM24O75264 130 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 RPN2P04844 631 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 BPGMP07738 259 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 CCL4P13236 92 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 ITIH1P19827 911 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 ATP5F1P24539 256 aaPredicted RBP14.48□□□□□ -0.09
TRIM28-207ENST00000597136 PEBP1P30086 187 aaKnown RBP14.48□□□□□ -0.09
TRIM28-207ENST00000597136 ETV5P41161 510 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 LSSP48449 732 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 SEPHS1P49903 392 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 AP1S2P56377 157 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 CDKL1Q00532 357 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 PCLAFQ15004 111 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 CDKL4Q5MAI5 379 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 RAB11FIP2Q7L804 512 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 OOSP2Q86WS3 158 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 C10orf107Q8IVU9 208 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 RAD51AP1Q96B01 352 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 LIN37Q96GY3 246 aaPredicted RBP14.48□□□□□ -0.09
TRIM28-207ENST00000597136 DPYSL5Q9BPU6 564 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 MECRQ9BV79 373 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 INTS9Q9NV88 658 aaKnown RBP14.48□□□□□ -0.09
TRIM28-207ENST00000597136 OCIAD1Q9NX40 245 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 ARL15Q9NXU5 204 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 NUDT4Q9NZJ9 180 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 DSPP15924 2871 aaKnown RBP14.48□□□□□ -0.09
TRIM28-207ENST00000597136 ZZEF1O43149 2961 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 LAMA5O15230 3695 aa14.48□□□□□ -0.09
TRIM28-207ENST00000597136 CCDC187A0A096LP49 1063 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 GSAPA4D1B5 854 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 NCF1BA6NI72 391 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 A8MT66 165 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 NCF1CA8MVU1 366 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 MYO1CO00159 1063 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 BIRC5O15392 142 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 KLK8O60259 260 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 GUCA1CO95843 209 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 CHRM5P08912 532 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 HIST1H2AGP0C0S8 130 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 NCF1P14598 390 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 HIST1H2ADP20671 130 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 PRDX3P30048 256 aaKnown RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 PKLRP30613 574 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 ALDH3A1P30838 453 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 SHMT2P34897 504 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 FASTKQ14296 549 aaKnown RBP14.47□□□□□ -0.09
TRIM28-207ENST00000597136 PFKFB4Q16877 469 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 CACHD1Q5VU97 1274 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 TTC23LQ6PF05 361 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 MBOAT1Q6ZNC8 495 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 TAX1BP1Q86VP1 789 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 FAM20CQ8IXL6 584 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 PDPRQ8NCN5 879 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 FLVCR1-AS1Q8TAF5 88 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 MAGEC3Q8TD91 643 aa14.47□□□□□ -0.09
TRIM28-207ENST00000597136 GATA6Q92908 595 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms