RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 MIPEPQ99797 713 aa19.48■□□□□ 0.71
CLK3-225ENST00000569063 TRIM51Q9BSJ1 452 aa19.48■□□□□ 0.71
CLK3-225ENST00000569063 NDC1Q9BTX1 674 aa19.48■□□□□ 0.71
CLK3-225ENST00000569063 PLAC1Q9HBJ0 212 aa19.48■□□□□ 0.71
CLK3-225ENST00000569063 IRAK4Q9NWZ3 460 aa19.48■□□□□ 0.71
CLK3-225ENST00000569063 DHCR7Q9UBM7 475 aaKnown RBP19.48■□□□□ 0.71
CLK3-225ENST00000569063 SNRNP200O75643 2136 aaKnown RBP19.48■□□□□ 0.71
CLK3-225ENST00000569063 MKRN2OSH3BPM6 223 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 J3QKU1 62 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 TP73O15350 636 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 RFPL1O75677 317 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 KLF7O75840 302 aaPredicted RBP19.47■□□□□ 0.71
CLK3-225ENST00000569063 SEC31AO94979 1220 aaKnown RBP19.47■□□□□ 0.71
CLK3-225ENST00000569063 CD63P08962 238 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 GABRB3P28472 473 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 ELK3P41970 407 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 ITGA8P53708 1063 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 ARSFP54793 590 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 NAA25Q14CX7 972 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 TCTE1Q5JU00 501 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 C1orf189Q5VU69 101 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 UGT3A1Q6NUS8 523 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 PRICKLE2Q7Z3G6 844 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 DLG3Q92796 817 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 CERS2Q96G23 380 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 SNF8Q96H20 258 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 PWWP2AQ96N64 755 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 TXLNGQ9NUQ3 528 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 PADI2Q9Y2J8 665 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 TEX264Q9Y6I9 313 aa19.47■□□□□ 0.71
CLK3-225ENST00000569063 ZNF839A8K0R7 811 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 ZBTB14O43829 449 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 SRPX2O60687 465 aaPredicted RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 CTSVO60911 334 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 AHSGP02765 367 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 CMPK1P30085 196 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 SKIV2L2P42285 1042 aaKnown RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 CARSP49589 748 aaKnown RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 PNLIPRP1P54315 467 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 TIAL1Q01085 375 aaKnown RBP eCLIP19.46■□□□□ 0.712e-7■■■■■ 33.6
CLK3-225ENST00000569063 HIF1AQ16665 826 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 LACTB2Q53H82 288 aaPredicted RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 FAM69BQ5VUD6 431 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 YOD1Q5VVQ6 348 aaPredicted RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 STEAP4Q687X5 459 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 LRRC8EQ6NSJ5 796 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 TCTN3Q6NUS6 607 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 ATG14Q6ZNE5 492 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 SPNS2Q8IVW8 549 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 CPNE9Q8IYJ1 553 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 KRT12Q99456 494 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 NDNQ99608 321 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 SELENOSQ9BQE4 189 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 WDR83Q9BRX9 315 aaKnown RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 ZNF71Q9NQZ8 489 aaPredicted RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 ZC3H7BQ9UGR2 993 aaKnown RBP19.46■□□□□ 0.71
CLK3-225ENST00000569063 TLK1Q9UKI8 766 aa19.46■□□□□ 0.71
CLK3-225ENST00000569063 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLK3-225ENST00000569063 ZNF462Q96JM2 2506 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 FITM1A5D6W6 292 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 SLC16A8O95907 504 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 RPA3P35244 121 aaPredicted RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 ARL4CP56559 192 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 CBLBQ13191 982 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 FRG1Q14331 258 aaKnown RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 GRM7Q14831 915 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 NKAIN1Q4KMZ8 207 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 HP1BP3Q5SSJ5 553 aaPredicted RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 TEDDM1Q5T9Z0 273 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 MLIPQ5VWP3 458 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 SUSD1Q6UWL2 747 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 PTRH1Q86Y79 214 aaKnown RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 ZNF480Q8WV37 535 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 TAS2R13Q9NYV9 303 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 IFT80Q9P2H3 777 aaPredicted RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 ANKMY1Q9P2S6 941 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 GPN3Q9UHW5 284 aaPredicted RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 TRMT6Q9UJA5 497 aaKnown RBP19.45■□□□□ 0.7
CLK3-225ENST00000569063 CHMP2BQ9UQN3 213 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 BAHCC1Q9P281 2608 aa19.45■□□□□ 0.7
CLK3-225ENST00000569063 OR2A25A4D2G3 310 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 EFCAB8A8MWE9 144 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 E7ENX8 843 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 NDC80O14777 642 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 ONECUT2O95948 504 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 ALAS2P22557 587 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 MCM3P25205 808 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 YBX1P67809 324 aaKnown RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 TAP2Q03519 686 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 PRDX1Q06830 199 aaKnown RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 MRPL14Q6P1L8 145 aaKnown RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 TTLL10Q6ZVT0 673 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 UBE2R2Q712K3 238 aaPredicted RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 RNF44Q7L0R7 432 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 PIWIL4Q7Z3Z4 852 aaKnown RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 EEF1AKMT1Q8WVE0 214 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 CFAP36Q96G28 342 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 DPH7Q9BTV6 452 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 ACAT2Q9BWD1 397 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 TRIM55Q9BYV6 548 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms