RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZUFSPQ96AP4 578 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 PDLIM5Q96HC4 596 aaKnown RBP12.51□□□□□ -0.41
CLK3-224ENST00000568605 PKP4Q99569 1192 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 SLC12A9Q9BXP2 914 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 PCBD2Q9H0N5 130 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 CDC42EP4Q9H3Q1 356 aaKnown RBP12.51□□□□□ -0.41
CLK3-224ENST00000568605 L2HGDHQ9H9P8 463 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 GPN2Q9H9Y4 310 aaPredicted RBP12.51□□□□□ -0.41
CLK3-224ENST00000568605 ARL15Q9NXU5 204 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 NINJ2Q9NZG7 142 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 SRPK3Q9UPE1 567 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 LHX6Q9UPM6 363 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 PLCL2Q9UPR0 1127 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 IKBKGQ9Y6K9 419 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 AP1M2Q9Y6Q5 423 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 CELSR3Q9NYQ7 3312 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 ZZEF1O43149 2961 aa12.51□□□□□ -0.41
CLK3-224ENST00000568605 CXorf49A8MYA2 514 aaPredicted RBP12.5□□□□□ -0.41
CLK3-224ENST00000568605 TARM1B6A8C7 271 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 OR2B3O76000 313 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 RHOXF2BP0C7M4 288 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 PSMB5P28074 263 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 IMPA1P29218 277 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 STAT5AP42229 794 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 TAS2R39P59534 338 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 TBPL1P62380 186 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ABATP80404 500 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 DEFB110Q30KQ9 67 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ICE2Q659A1 982 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 TLDC1Q6P9B6 456 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 CYHR1Q6ZMK1 362 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 GPR155Q7Z3F1 870 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 CCDC91Q7Z6B0 441 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 VASH2Q86V25 355 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 GALNT6Q8NCL4 622 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 OR2A1Q8NGT9 310 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ZNF480Q8WV37 535 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 CLIP3Q96DZ5 547 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 MIPEPQ99797 713 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 RHOXF2Q9BQY4 288 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 MCMBPQ9BTE3 642 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ACSS3Q9H6R3 686 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ACTR5Q9H9F9 607 aaPredicted RBP12.5□□□□□ -0.41
CLK3-224ENST00000568605 MRPS30Q9NP92 439 aaKnown RBP12.5□□□□□ -0.41
CLK3-224ENST00000568605 STOX2Q9P2F5 926 aaPredicted RBP12.5□□□□□ -0.41
CLK3-224ENST00000568605 TAC3Q9UHF0 121 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ADAMTS6Q9UKP5 1117 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 NOVA2Q9UNW9 492 aaKnown RBP12.5□□□□□ -0.41
CLK3-224ENST00000568605 PDE10AQ9Y233 779 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 SSUH2Q9Y2M2 353 aa12.5□□□□□ -0.41
CLK3-224ENST00000568605 ITPR1Q14643 2758 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 TEX51A0A1B0GUA7 166 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 E7ENX8 843 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 ZSCAN9O15535 394 aaPredicted RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 PRICKLE3O43900 615 aaPredicted RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 ZNF500O60304 480 aaPredicted RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 PIAS1O75925 651 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 ACSL3O95573 720 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 TSPAN12O95859 305 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 C1QAP02745 245 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 KLK3P07288 261 aaPredicted RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 ZNF28P17035 718 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 ECHS1P30084 290 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 RAB10P61026 200 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 TAP2Q03519 686 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 FASTKQ14296 549 aaKnown RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 ZNF460Q14592 562 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 UAP1Q16222 522 aaPredicted RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 TCTE1Q5JU00 501 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 TEX35Q5T0J7 233 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 PRAMEF13Q5VWM6 474 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 KIAA1614Q5VZ46 1190 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 FIGLAQ6QHK4 219 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 SUSD1Q6UWL2 747 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 RAPH1Q70E73 1250 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 PPFIBP2Q8ND30 876 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 OR1L3Q8NH93 324 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 DLG3Q92796 817 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 LRFN5Q96NI6 719 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 DPH2Q9BQC3 489 aaPredicted RBP12.49□□□□□ -0.41
CLK3-224ENST00000568605 SELENOSQ9BQE4 189 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 ACAT2Q9BWD1 397 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 SPRY4Q9C004 299 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 DERL2Q9GZP9 239 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 CPNE5Q9HCH3 593 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 FAM60AQ9NP50 221 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 TXLNGQ9NUQ3 528 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 ABCF3Q9NUQ8 709 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 CTNNAL1Q9UBT7 734 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 KCND3Q9UK17 655 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 PADI1Q9ULC6 663 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 NFU1Q9UMS0 254 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 KLK4Q9Y5K2 254 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 ZFHX4Q86UP3 3567 aa12.49□□□□□ -0.41
CLK3-224ENST00000568605 A0A087WUV0 522 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 A0A1W2PPV9 198 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 ZNF891A8MT65 544 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 C21orf140B9A014 251 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 K7ENP7 123 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 TIAF1O95411 115 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms