RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PNLIPRP1P54315 467 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 PLTPP55058 493 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MRPS25P82663 173 aaKnown RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 PDAP1Q13442 181 aaKnown RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 ZIC1Q15915 447 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 CCSMST1Q4G0I0 132 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 TRMT10BQ6PF06 316 aaKnown RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 FIGLAQ6QHK4 219 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 CYHR1Q6ZMK1 362 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 UBE2R2Q712K3 238 aaPredicted RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 DSELQ8IZU8 1212 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 DNAJC22Q8N4W6 341 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 GPATCH11Q8N954 259 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MCOLN3Q8TDD5 553 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MR1Q95460 341 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MED8Q96G25 268 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 C17orf62Q9BQA9 187 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 WDR83Q9BRX9 315 aaKnown RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 PLAC1Q9HBJ0 212 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 FAM60AQ9NP50 221 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 SAYSD1Q9NPB0 183 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 IRAK4Q9NWZ3 460 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MOCS1Q9NZB8 636 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 GRHL1Q9NZI5 618 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 SRPK3Q9UPE1 567 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 VWA7Q9Y334 891 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 SLC16A5O15375 505 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 ZNF749O43361 778 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 WISP1O95388 367 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 SYF2O95926 243 aaKnown RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 CD63P08962 238 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 HIST1H2AGP0C0S8 130 aaPredicted RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 HIST1H2ADP20671 130 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 RPA3P35244 121 aaPredicted RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 GABRA4P48169 554 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 IL2P60568 153 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 CDC20Q12834 499 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 GPS2Q13227 327 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 SP140Q13342 867 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 FASTKD3Q14CZ7 662 aaKnown RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 TCTE1Q5JU00 501 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 RBM20Q5T481 1227 aaKnown RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 HECTD2Q5U5R9 776 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 CEP128Q6ZU80 1094 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 CYS1Q717R9 158 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 STRA8Q7Z7C7 330 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 SYTL1Q8IYJ3 562 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 OR2L3Q8NG85 312 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 OR2A1Q8NGT9 310 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 CT55Q8WUE5 264 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 EEF1AKMT1Q8WVE0 214 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 DLG3Q92796 817 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 HIST1H2AHQ96KK5 128 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 PKP4Q99569 1192 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 HIST1H2AJQ99878 128 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 H2AFJQ9BTM1 129 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 TRIM54Q9BYV2 358 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 TXLNGQ9NUQ3 528 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 EURLQ9NYK6 297 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 TXNDC16Q9P2K2 825 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 ANKMY1Q9P2S6 941 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 IL17BQ9UHF5 180 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 FARSAQ9Y285 508 aaKnown RBP12.88□□□□□ -0.35
CLK3-216ENST00000564468 KLK4Q9Y5K2 254 aa12.88□□□□□ -0.35
CLK3-216ENST00000564468 TERTO14746 1132 aaKnown RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 ZSCAN9O15535 394 aaPredicted RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 SLC28A2O43868 658 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 SRPX2O60687 465 aaPredicted RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 CREG1O75629 220 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 RAB40ALP0C0E4 278 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 PTPN4P29074 926 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 GRIA3P42263 894 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 ARSFP54793 590 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 CDKN2DP55273 166 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 CYP4F2P78329 520 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 ABATP80404 500 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 TSTA3Q13630 321 aaPredicted RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 LY6DQ14210 128 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 FASTKQ14296 549 aaKnown RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 DEFB110Q30KQ9 67 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 YOD1Q5VVQ6 348 aaPredicted RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 RHBDD2Q6NTF9 364 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 C16orf46Q6P387 395 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 BORAQ6PGQ7 559 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 PAQR3Q6TCH7 311 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 ZNF517Q6ZMY9 492 aaPredicted RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 PIWIL4Q7Z3Z4 852 aaKnown RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 MCATQ8IVS2 390 aaKnown RBP12.87□□□□□ -0.35
CLK3-216ENST00000564468 KIF18AQ8NI77 898 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 FBXO25Q8TCJ0 367 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 PROKR1Q8TCW9 393 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 EXTL1Q92935 676 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 RNF31Q96EP0 1072 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 VPS39Q96JC1 886 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 CCDC138Q96M89 665 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 MIPEPQ99797 713 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 NDC1Q9BTX1 674 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 PARVBQ9HBI1 364 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 MRPS30Q9NP92 439 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms