RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RPL35AP18077 110 aaKnown RBP3.48□□□□□ -1.85
VPS13C-208ENST00000559119 ACSL1P33121 698 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 ETV5P41161 510 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 MS4A18Q3C1V0 323 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 SNX30Q5VWJ9 437 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 LCLAT1Q6UWP7 414 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 ADGRF2Q8IZF7 708 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 KLHDC1Q8N7A1 406 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 C1orf131Q8NDD1 294 aaKnown RBP3.48□□□□□ -1.85
VPS13C-208ENST00000559119 UCMAQ8WVF2 138 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 CNRIP1Q96F85 164 aaPredicted RBP3.48□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF597Q96LX8 424 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 LPAR4Q99677 370 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 MAP3K3Q99759 626 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 PANK2Q9BZ23 570 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 GTSE1Q9NYZ3 720 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 PLAGL1Q9UM63 463 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF541Q9H0D2 1346 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF644Q9H582 1327 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-208ENST00000559119 CEACAM4O75871 244 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 TBX18O95935 607 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 SCGB1D1O95968 90 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 GJA1P17302 382 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 CLCN4P51793 760 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 SETQ01105 290 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-208ENST00000559119 TAB1Q15750 504 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 DHRS7BQ6IAN0 325 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-208ENST00000559119 C11orf63Q6NUN7 778 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 OR5T2Q8NGG2 359 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 C9orf43Q8TAL5 461 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-208ENST00000559119 SAT2Q96F10 170 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-208ENST00000559119 OVOL2Q9BRP0 275 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 SMARCAD1Q9H4L7 1026 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 B4GALT7Q9UBV7 327 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 TSPAN16Q9UKR8 245 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 STYXL1Q9Y6J8 313 aa3.47□□□□□ -1.85
VPS13C-208ENST00000559119 IGHV4-30-2A0A087WSY4 118 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 SHISA7A6NL88 538 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 TEX28O15482 410 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 LRCH4O75427 683 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 PTPN3P26045 913 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 LMAN1P49257 510 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 KRTAP10-1P60331 282 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 IRX4P78413 519 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 POU5F1Q01860 360 aaKnown RBP3.46□□□□□ -1.86
VPS13C-208ENST00000559119 FAM189A2Q15884 450 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 FHL5Q5TD97 284 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 HAUS3Q68CZ6 603 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 LEKR1Q6ZMV7 388 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 AACSQ86V21 672 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 TMEM173Q86WV6 379 aaPredicted RBP3.46□□□□□ -1.86
VPS13C-208ENST00000559119 SLC37A3Q8NCC5 494 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 SSMEM1Q8WWF3 244 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 PPM1MQ96MI6 270 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 LINC00167Q96N53 147 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 MTMR12Q9C0I1 747 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 KRT84Q9NSB2 600 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 AASSQ9UDR5 926 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 VSIG4Q9Y279 399 aa3.46□□□□□ -1.86
VPS13C-208ENST00000559119 SNURFLB1AK76 121 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 SMIM18P0DKX4 95 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 KLK2P20151 261 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 PTGER4P35408 488 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 KRT32Q14532 448 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 C3AR1Q16581 482 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 CA9Q16790 459 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 Q6ZVH6 145 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 TIPARPQ7Z3E1 657 aaKnown RBP3.45□□□□□ -1.86
VPS13C-208ENST00000559119 KLHL30-AS1Q8NEE0 82 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 CALML4Q96GE6 196 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 KIFC3Q9BVG8 833 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 PARLQ9H300 379 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 UNC45AQ9H3U1 944 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 MTHFD2LQ9H903 347 aaPredicted RBP3.45□□□□□ -1.86
VPS13C-208ENST00000559119 OLA1Q9NTK5 396 aaKnown RBP3.45□□□□□ -1.86
VPS13C-208ENST00000559119 ARHGEF38Q9NXL2 777 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 SEC63Q9UGP8 760 aaKnown RBP3.45□□□□□ -1.86
VPS13C-208ENST00000559119 POMT2Q9UKY4 750 aa3.45□□□□□ -1.86
VPS13C-208ENST00000559119 TRIM49BA6NDI0 452 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 ZNF840PA6NDX5 716 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 B4E171 279 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 FPGTO14772 594 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 NPHP1O15259 732 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 SNAP91O60641 907 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 ZBTB25P24278 435 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 MAN1A1P33908 653 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 SOX3P41225 446 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 TSPAN7P41732 249 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 HLCSP50747 726 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 MYL7Q01449 175 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 AIMP2Q13155 320 aaKnown RBP3.44□□□□□ -1.86
VPS13C-208ENST00000559119 SYT14P1Q58G82 188 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 LCE1CQ5T751 118 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 LCE1BQ5T7P3 118 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 CEP57Q86XR8 500 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 PHC2Q8IXK0 858 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 EXD1Q8NHP7 514 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 RHOXF1Q8NHV9 184 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 THOC1Q96FV9 657 aaKnown RBP3.44□□□□□ -1.86
VPS13C-208ENST00000559119 C4orf45Q96LM5 186 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms