RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	LSMEM2	Q8N112	164 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	LGI4	Q8N135	537 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	MINDY1	Q8N5J2	469 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF431	Q8TF32	576 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	KLRG1	Q96E93	195 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM80	Q96HE8	168 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TSGA13	Q96PP4	275 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC2A13	Q96QE2	648 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IL4I1	Q96RQ9	567 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SMO	Q99835	787 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC35A5	Q9BS91	424 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSTO2	Q9H4Y5	243 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	C12orf4	Q9NQ89	552 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PDLIM7	Q9NR12	457 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IL37	Q9NZH6	218 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DNAJC27	Q9NZQ0	273 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PPIE	Q9UNP9	301 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM240B	A0A1B0GVZ2	78 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	KIAA0513	O60268	411 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR7A10	O76100	309 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NDST3	O95803	873 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ESR1	P03372	595 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PFKL	P17858	780 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SERPINA4	P29622	427 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	LEPR	P48357	1165 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RNF144A	P50876	292 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	EMX2	Q04743	252 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IL10RB	Q08334	325 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	C2orf80	Q0P641	193 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NFE2L1	Q14494	772 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF613	Q6PF04	617 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	LINGO2	Q7L985	606 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	COMMD7	Q86VX2	200 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	LSM14A	Q8ND56	463 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RASSF5	Q8WWW0	418 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	MUL1	Q969V5	352 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NTAN1	Q96AB6	310 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAD51AP1	Q96B01	352 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	HAPLN3	Q96S86	360 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RHBG	Q9H310	441 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	OSGEPL1	Q9H4B0	414 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	AASDHPPT	Q9NRN7	309 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	AIG1	Q9NVV5	245 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GDAP2	Q9NXN4	497 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPRC5B	Q9NZH0	403 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHB1	Q9Y5F3	818 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	MYH10	P35580	1976 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM92A	A1XBS5	289 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHURC1-FNTB	B4DL54	471 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLITRK5	O94991	958 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR5F1	O95221	314 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAB36	O95755	333 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TFAP2A	P05549	437 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ALDOC	P09972	364 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	HTR1B	P28222	390 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPAM1	P38567	509 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC15A1	P46059	708 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPIA	P49247	311 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF730	Q6ZMV8	503 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	RNF44	Q7L0R7	432 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZFAND4	Q86XD8	727 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	WAC	Q9BTA9	647 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	PDCD10	Q9BUL8	212 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	PFDN2	Q9UHV9	154 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	INTS6	Q9UL03	887 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TLR6	Q9Y2C9	796 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPIN1	Q9Y657	262 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABCA3	Q99758	1704 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005		A0A0U1RQS6	177 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	IQCM	A0A1B0GVH7	501 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR2AG2	A6NM03	316 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF487	B1APH4	448 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	BTBD19	C9JJ37	291 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	DYRK3	O43781	588 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAFK	O60675	156 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	S1PR4	O95977	384 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPL9	P32969	192 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	NUP62	P37198	522 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MANF	P55145	182 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSTM4	Q03013	218 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TAF10	Q12962	218 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SEMA3A	Q14563	771 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCNJ8	Q15842	424 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CLEC12A	Q5QGZ9	265 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRIM40	Q6P9F5	258 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	DEFB128	Q7Z7B8	93 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CACUL1	Q86Y37	369 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZZZ3	Q8IYH5	903 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GALNT6	Q8NCL4	622 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR52L1	Q8NGH7	329 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	EXOSC8	Q96B26	276 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MCMBP	Q9BTE3	642 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACAT2	Q9BWD1	397 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATP13A3	Q9H7F0	1226 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM138	Q9NPI0	162 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCTD5	Q9NXV2	234 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GTF2IRD1	Q9UHL9	959 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF510	Q9Y2H8	683 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 47 ms