RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 WBP11Q9Y2W2 641 aaKnown RBP3.2□□□□□ -1.9
SCFD1-216ENST00000555550 TMED3Q9Y3Q3 217 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 TRIM17Q9Y577 477 aa3.2□□□□□ -1.9
SCFD1-216ENST00000555550 RSF1Q96T23 1441 aaPredicted RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 TDRD15B5MCY1 1934 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 MEX3AA1L020 520 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 ANKRD18BA2A2Z9 1011 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 PRKAR1AP10644 381 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 PRG2P13727 222 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 GATA2P23769 480 aaPredicted RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 EIF2DP41214 584 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 ZNF75DP51815 510 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 PSMC6P62333 389 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 CYCSP99999 105 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 CUL4AQ13619 759 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 CA9Q16790 459 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 GLIPR1L2Q4G1C9 344 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 TCTEX1D4Q5JR98 221 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 SLC25A47Q6Q0C1 308 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 GPRIN3Q6ZVF9 776 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 MINDY1Q8N5J2 469 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 PRPF31Q8WWY3 499 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 GTF3AQ92664 365 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 ZNF622Q969S3 477 aaKnown RBP eCLIP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 SLC22A18Q96BI1 424 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 NSUN4Q96CB9 384 aaKnown RBP3.19□□□□□ -1.9
SCFD1-216ENST00000555550 C10orf90Q96M02 699 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 TBC1D22BQ9NU19 505 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 PCDHGB4Q9UN71 923 aa3.19□□□□□ -1.9
SCFD1-216ENST00000555550 A0A1W2PR80 420 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 TMEM221A6NGB7 291 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 ENTPD3O75355 529 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 TRUB2O95900 331 aaKnown RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 IGHEP01854 428 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 DNAH10OSP0CZ25 163 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 HAPLN1P10915 354 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 PFKFB1P16118 471 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 TLX1P31314 330 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 MTHFRP42898 656 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 TSFMP43897 325 aaKnown RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 GSCP56915 257 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 UBXN2AP68543 259 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 GUCY2DQ02846 1103 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 MTHFSDQ2M296 383 aaKnown RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 UGT3A2Q3SY77 523 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 MOGAT2Q3SYC2 334 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 ZNF595Q8IYB9 648 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 LGI2Q8N0V4 545 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 THAP8Q8NA92 274 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 Q8NBF4 154 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 NUP37Q8NFH4 326 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 OR1L3Q8NH93 324 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 FAM20AQ96MK3 541 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 MRPL1Q9BYD6 325 aaKnown RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 NYXQ9GZU5 481 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 THAP2Q9H0W7 228 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 GOLPH3LQ9H4A5 285 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 PANK3Q9H999 370 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 TRPV4Q9HBA0 871 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 CHST11Q9NPF2 352 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 CPSF2Q9P2I0 782 aaKnown RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 FBXO2Q9UK22 296 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 CSAG2Q9Y5P2 127 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 KLF2Q9Y5W3 355 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-216ENST00000555550 CSNK1G3Q9Y6M4 447 aa3.18□□□□□ -1.9
SCFD1-216ENST00000555550 FEZF1A0PJY2 475 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 SOCS3O14543 225 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 WDHD1O75717 1129 aaPredicted RBP3.17□□□□□ -1.9
SCFD1-216ENST00000555550 PORP16435 677 aaPredicted RBP3.17□□□□□ -1.9
SCFD1-216ENST00000555550 CAPN2P17655 700 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 LMAN1P49257 510 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 MAPK12P53778 367 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 TMEM50BP56557 158 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 MAT1AQ00266 395 aaKnown RBP3.17□□□□□ -1.9
SCFD1-216ENST00000555550 KLC1Q07866 573 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 STK4Q13043 487 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 CALCOCO2Q13137 446 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 NFATC2Q13469 925 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 ZNF74Q16587 644 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 MEA1Q16626 185 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 PHKG1Q16816 387 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 CBWD6Q4V339 395 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 CBWD3Q5JTY5 395 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 UGT3A1Q6NUS8 523 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 MFSD12Q6NUT3 480 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 ZNF774Q6NX45 483 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 ZNF343Q6P1L6 599 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 CDC20BQ86Y33 519 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 DNAAF5Q86Y56 855 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 CERS3Q8IU89 383 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 MMD2Q8IY49 270 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 OR10S1Q8NGN2 331 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 ATP8B4Q8TF62 1192 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 APOBEC4Q8WW27 367 aaKnown RBP3.17□□□□□ -1.9
SCFD1-216ENST00000555550 PIGBQ92521 554 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 RASL10AQ92737 203 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 TMCO6Q96DC7 493 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 SOSTQ9BQB4 213 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms