RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 H3BMM5 538 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 GOLGA8TH3BQL2 631 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 MASP2O00187 686 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 PFDN6O15212 129 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 SRPX2O60687 465 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-207ENST00000531727 CTSVO60911 334 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 ESR1P03372 595 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 ATP5DP30049 168 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 ADARP55265 1226 aaKnown RBP16.11■□□□□ 0.17
CPSF1-207ENST00000531727 AIMP2Q13155 320 aaKnown RBP16.11■□□□□ 0.17
CPSF1-207ENST00000531727 GBX1Q14549 363 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 COX15Q7KZN9 410 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 IQCKQ8N0W5 287 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 TRIM58Q8NG06 486 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 OR2L3Q8NG85 312 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-207ENST00000531727 TM9SF4Q92544 642 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 SPSB2Q99619 263 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 IL1RAPL1Q9NZN1 696 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 SPATA7Q9P0W8 599 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 CDC23Q9UJX2 597 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 FBXL4Q9UKA2 621 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 NXT1Q9UKK6 140 aaKnown RBP16.11■□□□□ 0.17
CPSF1-207ENST00000531727 FAM169AQ9Y6X4 670 aa16.11■□□□□ 0.17
CPSF1-207ENST00000531727 CEP104O60308 925 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 NIPSNAP2O75323 286 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 SEMA7AO75326 666 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 MATN4O95460 622 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 VSX2P58304 361 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-207ENST00000531727 MRPL49Q13405 166 aaKnown RBP16.1■□□□□ 0.17
CPSF1-207ENST00000531727 FAM214AQ32MH5 1076 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 WASHC2DQ5SRD0 308 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 ARMC3Q5W041 872 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 KIAA0930Q6ICG6 404 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-207ENST00000531727 FRMPD2BQ6IN97 320 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 RNF44Q7L0R7 432 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 PRELID2Q8N945 189 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 OR2A1Q8NGT9 310 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 SSC4DQ8WTU2 575 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 SNRNP40Q96DI7 357 aaKnown RBP16.1■□□□□ 0.17
CPSF1-207ENST00000531727 C19orf60Q96EN9 201 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 ILKAPQ9H0C8 392 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-207ENST00000531727 SLC6A20Q9NP91 592 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 TSR3Q9UJK0 312 aaKnown RBP16.1■□□□□ 0.17
CPSF1-207ENST00000531727 ANKRD12Q6UB98 2062 aa16.1■□□□□ 0.17
CPSF1-207ENST00000531727 USP9XQ93008 2570 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 UTP20O75691 2785 aaKnown RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 SOCS6O14544 535 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 NRP2O60462 931 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 ERGP11308 486 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 PAMP19021 973 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 OGNP20774 298 aaKnown RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 ITGA3P26006 1051 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 CXCR5P32302 372 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 MAGEA6P43360 314 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 OR1D4P47884 311 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 SARNPP82979 210 aaKnown RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 FASTKQ14296 549 aaKnown RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 KCNJ11Q14654 390 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 NAA25Q14CX7 972 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 KCTD19Q17RG1 926 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 PRAMEF13Q5VWM6 474 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 ZADH2Q8N4Q0 377 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 FAM136AQ96C01 138 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 SOX17Q9H6I2 414 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 ZBTB20Q9HC78 741 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 CUEDC1Q9NWM3 386 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-207ENST00000531727 CTSFQ9UBX1 484 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 CRYL1Q9Y2S2 319 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 HS3ST3B1Q9Y662 390 aa16.09■□□□□ 0.17
CPSF1-207ENST00000531727 LOC105369274A0A096LPK9 316 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 LOC102723532A0A0G2JNH3 316 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 HYKKA2RU49 373 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 OR2A25A4D2G3 310 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 VSTM2BA6NLU5 285 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 ARHGEF33A8MVX0 844 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 ALOX12BO75342 701 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 AVILO75366 819 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 CHRM3P20309 590 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 CMPK1P30085 196 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 TERF1P54274 439 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 TRIP13Q15645 432 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-207ENST00000531727 EIF2S3LQ2VIR3 472 aaKnown RBP16.08■□□□□ 0.16
CPSF1-207ENST00000531727 KIRREL2Q6UWL6 708 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 Q6ZS92 163 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 SHISA6Q6ZSJ9 500 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 CENPUQ71F23 418 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 OR4N4Q8N0Y3 316 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 CISD2Q8N5K1 135 aaKnown RBP16.08■□□□□ 0.16
CPSF1-207ENST00000531727 METTL27Q8N6F8 245 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-207ENST00000531727 OR9A1PQ8NGU1 263 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 INPP5DQ92835 1189 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 ZNF304Q9HCX3 659 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 SEMA3GQ9NS98 782 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 ASF1BQ9NVP2 202 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 GALPQ9UBC7 116 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 ZC3H7BQ9UGR2 993 aaKnown RBP16.08■□□□□ 0.16
CPSF1-207ENST00000531727 MAU2Q9Y6X3 613 aa16.08■□□□□ 0.16
CPSF1-207ENST00000531727 USP9YO00507 2555 aaPredicted RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms