RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CHMP2AO43633 222 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLRG1O43660 514 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NME2P1O60361 137 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACSL4O60488 711 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RANBP6O60518 1105 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CIDEAO60543 219 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NMT2O60551 498 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SELENOFO60613 162 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 B4GALT2O60909 372 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SDC3O75056 442 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP6V1G1O75348 118 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRIM3O75382 744 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 VPS26AO75436 327 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF254O75437 659 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ECI2O75521 394 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAG2O75638 210 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCAR3O75815 825 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SERPINI2O75830 405 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FLOT1O75955 427 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SUN1O94901 812 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLCEO94923 617 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NKX2-2O95096 273 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6A2O95222 327 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZWINTO95229 277 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 VNN2O95498 520 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CBX6O95503 412 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NTN1O95631 604 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CXCL14O95715 111 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MBD3O95983 291 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TOP3BO95985 862 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CH25HO95992 272 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCL10O95999 233 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFB10O96000 172 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OTCP00480 354 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAP00813 363 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TGFAP01135 160 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CGAP01215 116 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGHV2-70P01814 119 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CXCL10P02778 98 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP1A1P05023 1023 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCCBP05166 539 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALPLP05186 524 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LIPFP07098 398 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 APRTP07741 180 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NGFRP08138 427 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASNSP08243 561 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MMP3P08254 477 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FGF4P08620 206 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALDOCP09972 364 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB40ALP0C0E4 278 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC172P0C7W6 258 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF735P0CB33 412 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 STAG3L3P0CL85 134 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RRASP10301 218 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SAGP10523 405 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTSAP10619 480 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPB41P11171 864 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RALBP11234 206 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSG1P11464 419 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FCGR2AP12318 317 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FCER1AP12319 257 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SKILP12757 684 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PEPDP12955 493 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LYL1P12980 280 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 F3P13726 295 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANXA8P13928 327 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKR1A1P14550 325 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYL6BP14649 208 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPA2P15927 270 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL7RP16871 459 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CEBPBP17676 345 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDX5P17844 614 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CD58P19256 250 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FUT1P19526 365 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHRM3P20309 590 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITGAXP20702 1163 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP6V1C1P21283 382 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DRD5P21918 477 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TGM2P21980 687 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDH3P22223 829 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CALB2P22676 271 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRKACBP22694 351 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DGKAP23743 735 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC6A2P23975 617 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP2F1P24903 491 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITGB8P26012 769 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTNNA2P26232 953 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELAVL4P26378 380 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTBP1P26599 531 aaKnown RBP eCLIP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 YWHAQP27348 245 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DPP4P27487 766 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITPKBP27987 946 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CD1BP29016 333 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADORA2AP29274 412 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTPN6P29350 595 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TYK2P29597 1187 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MARCKSP29966 332 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALDH4A1P30038 563 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AXLP30530 894 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PKLRP30613 574 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms