RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 APOBEC4Q8WW27 367 aaKnown RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 ASB11Q8WXH4 323 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 DLG3Q92796 817 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 KCNJ9Q92806 393 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 SLC22A18Q96BI1 424 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 CERS2Q96G23 380 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 ABHD17AQ96GS6 310 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 RUNDC3BQ96NL0 473 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 GEMIN8Q9NWZ8 242 aaKnown RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 RNF14Q9UBS8 474 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 NDOR1Q9UHB4 597 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 ADAMTS6Q9UKP5 1117 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 PLCL2Q9UPR0 1127 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 PSAT1Q9Y617 370 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 KCNMB2Q9Y691 235 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 B8ZZF3 427 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 C21orf140B9A014 251 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 MASP2O00187 686 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ZSCAN9O15535 394 aaPredicted RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 CNOT3O75175 753 aaKnown RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 VPS26AO75436 327 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 SLC16A8O95907 504 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 STATHP02808 62 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 CATP04040 527 aaKnown RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 EIF2S1P05198 315 aaKnown RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 MSL3P1P0C860 447 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ATP5DP30049 168 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 KCNAB2Q13303 367 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 TTLL9Q3SXZ7 439 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ZNF385CQ66K41 422 aaPredicted RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 CPZQ66K79 652 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 FAM198BQ6UWH4 519 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ZNF517Q6ZMY9 492 aaPredicted RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 TTLL10Q6ZVT0 673 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 UBE2R2Q712K3 238 aaPredicted RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 PRICKLE2Q7Z3G6 844 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 OR2L3Q8NG85 312 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 MAGEC3Q8TD91 643 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ZNF480Q8WV37 535 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ALKBH8Q96BT7 664 aaKnown RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 CATSPER2Q96P56 530 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 OLFM1Q99784 485 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 ERP44Q9BS26 406 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 DPH7Q9BTV6 452 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 GPR87Q9BY21 358 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 TRIM55Q9BYV6 548 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 TRIM4Q9C037 500 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 SYNPO2LQ9H987 977 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 SYTL2Q9HCH5 934 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 SLC6A20Q9NP91 592 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 TRMT6Q9UJA5 497 aaKnown RBP11.03□□□□□ -0.64
VCAN-212ENST00000515397 TCFL5Q9UL49 500 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 SNX7Q9UNH6 387 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 POLHQ9Y253 713 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 PCDHGA6Q9Y5G7 932 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 NBASA2RRP1 2371 aa11.03□□□□□ -0.64
VCAN-212ENST00000515397 MED13Q9UHV7 2174 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 IGKV1-8A0A0C4DH67 115 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 ARGFXA6NJG6 315 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 GFYI3L273 518 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 MYO1CO00159 1063 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 ZBTB14O43829 449 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 MED26O95402 600 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 MPC1LP0DKB6 136 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 RPA3P35244 121 aaPredicted RBP11.02□□□□□ -0.65
VCAN-212ENST00000515397 CCL11P51671 97 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 PNLIPRP1P54315 467 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 DCDP81605 110 aaKnown RBP11.02□□□□□ -0.65
VCAN-212ENST00000515397 SLC7A5Q01650 507 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 WASHC2DQ5SRD0 308 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 HECTD2Q5U5R9 776 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 STEAP4Q687X5 459 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 FBXO42Q6P3S6 717 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SHISA6Q6ZSJ9 500 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 PLD3Q8IV08 490 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 LMNTD2Q8IXW0 634 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 ZBED8Q8IZ13 594 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 RAB42Q8N4Z0 105 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SMPDL3AQ92484 453 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 ZNF592Q92610 1267 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 LINGO1Q96FE5 620 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 C16orf45Q96MC5 204 aaPredicted RBP11.02□□□□□ -0.65
VCAN-212ENST00000515397 LRFN5Q96NI6 719 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 GBP5Q96PP8 586 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SELENOSQ9BQE4 189 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 NAT9Q9BTE0 207 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 NDC1Q9BTX1 674 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 RAB11FIP5Q9BXF6 653 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 NLNQ9BYT8 704 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SLC25A18Q9H1K4 315 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SAYSD1Q9NPB0 183 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SMYD2Q9NRG4 433 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 FAM114A2Q9NRY5 505 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SLC22A11Q9NSA0 550 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 TXLNGQ9NUQ3 528 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 CUEDC1Q9NWM3 386 aaPredicted RBP11.02□□□□□ -0.65
VCAN-212ENST00000515397 GRHL1Q9NZI5 618 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 SPATA7Q9P0W8 599 aa11.02□□□□□ -0.65
VCAN-212ENST00000515397 IFT80Q9P2H3 777 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms