RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TMEM135Q86UB9 458 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 STX19Q8N4C7 294 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 WDR36Q8NI36 951 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 TWIST2Q8WVJ9 160 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 FCGR1BQ92637 280 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 MRGPRX2Q96LB1 330 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ACTR10Q9NZ32 417 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 LEF1Q9UJU2 399 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CSNK1G3Q9Y6M4 447 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 hCG_1807616A0A1W2PRN6 198 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 UBA6A0AVT1 1052 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 GREM1O60565 184 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SELLP14151 372 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CHMP24386 653 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ICAM3P32942 547 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC19A1P41440 591 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 RBP5P82980 135 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CDH17Q12864 832 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 FBXO48Q5FWF7 155 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 Q6ZPB1 254 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 DPP9Q86TI2 863 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ZSWIM9Q86XI8 627 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC34A3Q8N130 599 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 OR11H4Q8NGC9 324 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 IPCEF1Q8WWN9 437 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 TTPALQ9BTX7 342 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 GSX2Q9BZM3 304 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 HEXA-AS1Q9H8Q6 139 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 GPRC5BQ9NZH0 403 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 KLF15Q9UIH9 416 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 TSR3Q9UJK0 312 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 LIPT1Q9Y234 373 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 KLF2Q9Y5W3 355 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 TCRBV16S1A1N1A0A5B0 115 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 CRCPO75575 148 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC2A3P11169 496 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 RECQLP46063 649 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 AP1S2P56377 157 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 EMX2Q04743 252 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ETFDHQ16134 617 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 CDKL4Q5MAI5 379 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 LCN1P1Q5VSP4 162 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 LRRC17Q8N6Y2 441 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 OR6P1Q8NGX9 317 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 FBLIM1Q8WUP2 373 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 FOXJ1Q92949 421 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 RBP7Q96R05 134 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 SDR39U1Q9NRG7 319 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 DNAJC11Q9NVH1 559 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 KIF17Q9P2E2 1029 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 LRFN2Q9ULH4 789 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 PPIEQ9UNP9 301 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 FKBP7Q9Y680 259 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 TOGARAM1Q9Y4F4 1720 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 TTLL8A6PVC2 850 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 POM121CA8CG34 1229 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 MPC2O95563 127 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 WDPCPO95876 746 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ECDO95905 644 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF806P0C7X5 589 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 INPP1P49441 399 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 SH3BP2P78314 561 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF91Q05481 1191 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 TRIQKQ629K1 86 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC26A9Q7LBE3 791 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 MFSD6LQ8IWD5 586 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF567Q8N184 647 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 MS4A15Q8N5U1 240 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 OR10A6Q8NH74 314 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 MYLPFQ96A32 169 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 UPRTQ96BW1 309 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 SAMD11Q96NU1 681 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 RBM14Q96PK6 669 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 MSTO1Q9BUK6 570 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 BARHL1Q9BZE3 327 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 GPR63Q9BZJ6 419 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 PDGFDQ9GZP0 370 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 TMEM245Q9H330 911 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 CDHR5Q9HBB8 845 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 GPR83Q9NYM4 423 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF490Q9ULM2 529 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 RICTORQ6R327 1708 aa11.75□□□□□ -0.53
LIMCH1-213ENST00000511496 LRRC14BA6NHZ5 514 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 C2CD4BA6NLJ0 364 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 H7C2Y5 167 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 WBP4O75554 376 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 CNPP09543 421 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 IL2RBP14784 551 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SPP2Q13103 211 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 GPR17Q13304 367 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 DMC1Q14565 340 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ATP6AP1LQ52LC2 224 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 FRMPD2BQ6IN97 320 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 RTL4Q6ZR62 310 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 EIF3MQ7L2H7 374 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 KANSL1Q7Z3B3 1105 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 PODNQ7Z5L7 613 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 C3orf58Q8NDZ4 430 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 NIF3L1Q9GZT8 377 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms