RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 DANCRP0C864 163 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 SLC2A2P11168 524 aaPredicted RBP2.64□□□□□ -1.99
VPS50-216ENST00000484954 CD27P26842 260 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 XGP55808 180 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 GUCY2DQ02846 1103 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 ZNF74Q16587 644 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 MOGAT2Q3SYC2 334 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 NUP54Q7Z3B4 507 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 ERC1Q8IUD2 1116 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 THAP8Q8NA92 274 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 OR6S1Q8NH40 331 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 EXD1Q8NHP7 514 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 ATP8B4Q8TF62 1192 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 ZNF622Q969S3 477 aaKnown RBP eCLIP2.64□□□□□ -1.99
VPS50-216ENST00000484954 NXNL1Q96CM4 212 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 RAB11FIP5Q9BXF6 653 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 PITPNM3Q9BZ71 974 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 MIS12Q9H081 205 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 WNT5BQ9H1J7 359 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.64□□□□□ -1.99
VPS50-216ENST00000484954 PRR34Q9NV39 138 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 FAM120CQ9NX05 1096 aaKnown RBP2.64□□□□□ -1.99
VPS50-216ENST00000484954 CRNNQ9UBG3 495 aaPredicted RBP2.64□□□□□ -1.99
VPS50-216ENST00000484954 PCDHGB4Q9UN71 923 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 TRIM17Q9Y577 477 aa2.64□□□□□ -1.99
VPS50-216ENST00000484954 RSF1Q96T23 1441 aaPredicted RBP2.64□□□□□ -1.99
VPS50-216ENST00000484954 hCG_1807616A0A1W2PRN6 198 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 A8MV72 311 aaPredicted RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 EPHB6O15197 1021 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 IGHV3-13P01766 116 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 IGHEP01854 428 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 CSTF2P33240 577 aaKnown RBP eCLIP2.63□□□□□ -1.99
VPS50-216ENST00000484954 STAT2P52630 851 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 KRTAP12-2P59991 146 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 CYCSP99999 105 aaKnown RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 RIGQ13278 110 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 PDLIM3Q53GG5 364 aaPredicted RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 SLC35D3Q5M8T2 416 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 LCN1P1Q5VSP4 162 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 KIF6Q6ZMV9 814 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 NUDT13Q86X67 352 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 KLHDC1Q8N7A1 406 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 MAPK15Q8TD08 544 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 NSUN4Q96CB9 384 aaKnown RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 SPACA9Q96E40 222 aaPredicted RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 SDF4Q9BRK5 362 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 TRIM6Q9C030 488 aaPredicted RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 TLE6Q9H808 572 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 PPANQ9NQ55 473 aaKnown RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 PRMT7Q9NVM4 692 aaPredicted RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 DPP3Q9NY33 737 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 VPS28Q9UK41 221 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 RNF150Q9ULK6 438 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 ABT1Q9ULW3 272 aaKnown RBP2.63□□□□□ -1.99
VPS50-216ENST00000484954 CSNK1G3Q9Y6M4 447 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 ITIH6Q6UXX5 1313 aa2.63□□□□□ -1.99
VPS50-216ENST00000484954 A0A1W2PPM1 405 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 IGHV2-70P01814 119 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 PORP16435 677 aaPredicted RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 CCR10P46092 362 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 LIMK2P53671 638 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 MAPK12P53778 367 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 NAP1L1P55209 391 aaKnown RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 GEMIN4P57678 1058 aaKnown RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 SIM2Q14190 667 aaPredicted RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 EFTUD2Q15029 972 aaKnown RBP eCLIP2.62□□□□□ -1.99
VPS50-216ENST00000484954 MEA1Q16626 185 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 CES4AQ5XG92 561 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 C11orf63Q6NUN7 778 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 LEKR1Q6ZMV7 388 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 C4orf50Q6ZRC1 276 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 G2E3Q7L622 706 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 LGI2Q8N0V4 545 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 MINDY1Q8N5J2 469 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 NUP37Q8NFH4 326 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 OR10S1Q8NGN2 331 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 OR10Q1Q8NGQ4 319 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 OR2L2Q8NH16 312 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 CFAP61Q8NHU2 1237 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 RASL10AQ92737 203 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 TMCO6Q96DC7 493 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 CNRIP1Q96F85 164 aaPredicted RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 THOC1Q96FV9 657 aaKnown RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 CALML4Q96GE6 196 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 C4orf45Q96LM5 186 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 TIGD1Q96MW7 591 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 SFXN2Q96NB2 322 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 SPAG5Q96R06 1193 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 TREX2Q9BQ50 279 aaPredicted RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 ZHX3Q9H4I2 956 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 GNB4Q9HAV0 340 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 PDE7BQ9NP56 450 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 TEX10Q9NXF1 929 aaPredicted RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 TP53TG3Q9ULZ0 132 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 WDR83OSQ9Y284 106 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 LAS1LQ9Y4W2 734 aaKnown RBP2.62□□□□□ -1.99
VPS50-216ENST00000484954 HCFC1P51610 2035 aa2.62□□□□□ -1.99
VPS50-216ENST00000484954 MYH14Q7Z406 1995 aaKnown RBP2.61□□□□□ -1.99
VPS50-216ENST00000484954 ARID2Q68CP9 1835 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 NEMP2A6NFY4 417 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms