RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 CPZQ66K79 652 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 MCATQ8IVS2 390 aaKnown RBP17.22■□□□□ 0.35
UPF3A-203ENST00000474056 CPNE9Q8IYJ1 553 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 C17orf53Q8N3J3 647 aaPredicted RBP17.22■□□□□ 0.35
UPF3A-203ENST00000474056 OR2L3Q8NG85 312 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 OR2A1Q8NGT9 310 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 PROKR1Q8TCW9 393 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 INPP5DQ92835 1189 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 DPH2Q9BQC3 489 aaPredicted RBP17.22■□□□□ 0.35
UPF3A-203ENST00000474056 TRIM55Q9BYV6 548 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 TRIM31Q9BZY9 425 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 KLHL42Q9P2K6 505 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 SRPK3Q9UPE1 567 aa17.22■□□□□ 0.35
UPF3A-203ENST00000474056 C9J4A7 227 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 CTSVO60911 334 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 VPS26AO75436 327 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 RFPL1O75677 317 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 SEC31AO94979 1220 aaKnown RBP17.21■□□□□ 0.35
UPF3A-203ENST00000474056 NR1D1P20393 614 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 MCM3P25205 808 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 ELK3P41970 407 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 PMS2P54278 862 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 TIAL1Q01085 375 aaKnown RBP eCLIP17.21■□□□□ 0.35
UPF3A-203ENST00000474056 CHAF1BQ13112 559 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 RBM20Q5T481 1227 aaKnown RBP17.21■□□□□ 0.35
UPF3A-203ENST00000474056 SUSD1Q6UWL2 747 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 CYHR1Q6ZMK1 362 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 PIWIL4Q7Z3Z4 852 aaKnown RBP17.21■□□□□ 0.35
UPF3A-203ENST00000474056 APLFQ8IW19 511 aaPredicted RBP17.21■□□□□ 0.35
UPF3A-203ENST00000474056 CNTN4Q8IWV2 1026 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 PDIK1LQ8N165 341 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 THAP4Q8WY91 577 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 ZUFSPQ96AP4 578 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 CERS2Q96G23 380 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 CFAP36Q96G28 342 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 SNF8Q96H20 258 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 KRT12Q99456 494 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 PKP4Q99569 1192 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 NDNQ99608 321 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 NAT9Q9BTE0 207 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 ACAT2Q9BWD1 397 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 FAM114A2Q9NRY5 505 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 TXLNGQ9NUQ3 528 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 RNF14Q9UBS8 474 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 TP53TG5Q9Y2B4 290 aa17.21■□□□□ 0.35
UPF3A-203ENST00000474056 ARGFXA6NJG6 315 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 TARM1B6A8C7 271 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 J3QKU1 62 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 K7EM74 188 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SMAPO00193 183 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 TP73O15350 636 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SUV39H1O43463 412 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 ENO3P13929 434 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 CARSP49589 748 aaKnown RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 DCDP81605 110 aaKnown RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 MRPS25P82663 173 aaKnown RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 TSTA3Q13630 321 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SLC9A5Q14940 896 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 LACTB2Q53H82 288 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 ZC3H12BQ5HYM0 836 aaKnown RBP17.2■□□□□ 0.34
UPF3A-203ENST00000474056 MLIPQ5VWP3 458 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 PPFIBP2Q8ND30 876 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 ASB11Q8WXH4 323 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SMPDL3AQ92484 453 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SELENOSQ9BQE4 189 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 NDC1Q9BTX1 674 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SLC6A20Q9NP91 592 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 TLK1Q9UKI8 766 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 KLK4Q9Y5K2 254 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 TEX264Q9Y6I9 313 aa17.2■□□□□ 0.34
UPF3A-203ENST00000474056 SPENQ96T58 3664 aaKnown RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 A0A0J9YVX5 310 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 EFCAB8A8MWE9 144 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 MKRN2OSH3BPM6 223 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 GFYI3L273 518 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 CNOT3O75175 753 aaKnown RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 KLF7O75840 302 aaPredicted RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 SLC16A8O95907 504 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 SYF2O95926 243 aaKnown RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 AHSGP02765 367 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 PNLIPRP1P54315 467 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 ARL4CP56559 192 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 FOXL2P58012 376 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 ARHGAP19Q14CB8 494 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 HIF1AQ16665 826 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 STEAP4Q687X5 459 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 FRMPD2BQ6IN97 320 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 TRMT10BQ6PF06 316 aaKnown RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 TTLL10Q6ZVT0 673 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 RNF44Q7L0R7 432 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 FBXO15Q8NCQ5 510 aaPredicted RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 GABPB2Q8TAK5 448 aaPredicted RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 ZNF480Q8WV37 535 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 ZNF285Q96NJ3 590 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 DPH7Q9BTV6 452 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 DHRS4Q9BTZ2 278 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 TRIM4Q9C037 500 aa17.19■□□□□ 0.34
UPF3A-203ENST00000474056 PPANQ9NQ55 473 aaKnown RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 ZC3H7BQ9UGR2 993 aaKnown RBP17.19■□□□□ 0.34
UPF3A-203ENST00000474056 TAC3Q9UHF0 121 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms