RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FGF1P05230 155 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 POLR2CP19387 275 aaPredicted RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 CHI3L1P36222 383 aaPredicted RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 OR1G1P47890 313 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 WNT3P56703 355 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 SNRPGP62308 76 aaKnown RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 SHC2P98077 582 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF658BQ4V348 819 aaPredicted RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 TRIM48Q8IWZ4 208 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 COL21A1Q96P44 957 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 C1orf109Q9NX04 203 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM161AQ9NX61 479 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 IKZF3Q9UKT9 509 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 CDV3Q9UKY7 258 aaKnown RBP5.21□□□□□ -1.57
SYNE1-220ENST00000471834 FZD1Q9UP38 647 aa5.21□□□□□ -1.57
SYNE1-220ENST00000471834 A0A0X1KG70 313 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FAM20BO75063 409 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 MLYCDO95822 493 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 IL1AP01583 271 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ZNF286BP0CG31 522 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 MZF1P28698 734 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RGS6P49758 472 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FOXA1P55317 472 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SOX4Q06945 474 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SLAMF1Q13291 335 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SERINC3Q13530 473 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ESRP1Q6NXG1 681 aaKnown RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 GPR152Q8TDT2 470 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TWIST2Q8WVJ9 160 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SLC13A3Q8WWT9 602 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 PYCR2Q96C36 320 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TMEM39BQ9GZU3 492 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RAD18Q9NS91 495 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RAPGEFL1Q9UHV5 662 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 DOCK1Q14185 1865 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SLC22A3O75751 556 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 CCNDBP1O95273 360 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 URODP06132 367 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TXNP10599 105 aaKnown RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 UBL4AP11441 157 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TIE1P35590 1138 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SERPINB10P48595 397 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TUFMP49411 452 aaKnown RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ARSDP51689 593 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 WNT3AP56704 352 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 MAP3K7CLP57077 242 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 OLR1P78380 273 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ELP6Q0PNE2 266 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 PDE7AQ13946 482 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 OCLNQ16625 522 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FAM98BQ52LJ0 330 aaKnown RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 HECTD2Q5U5R9 776 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 KIAA1211LQ6NV74 962 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 USP50Q70EL3 339 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RNF148Q8N7C7 305 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 AMER2Q8N7J2 671 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 EFHBQ8N7U6 833 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ASZ1Q8WWH4 475 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TMEM80Q96HE8 168 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ZNF578Q96N58 590 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 B3GNT5Q9BYG0 378 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 NXF3Q9H4D5 531 aaKnown RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RERGLQ9H628 205 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SEC14L4Q9UDX3 406 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 KLQ9UEF7 1012 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SLC39A10Q9ULF5 831 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TPRKBQ9Y3C4 175 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 MFHAS1Q9Y4C4 1052 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 PCDHB5Q9Y5E4 795 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 CDK2AP1O14519 115 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TPST2O60704 377 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 NBNO60934 754 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RECQL5O94762 991 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 NADKO95544 446 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FTH1P02794 183 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 HOXB3P14651 431 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TYMPP19971 482 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 GMPSP49915 693 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 SEMG2Q02383 582 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 CLCQ05315 142 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 C9orf57Q5W0N0 161 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 GLYATQ6IB77 296 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ERICH5Q6P6B1 374 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ANKS3Q6ZW76 656 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 DENND6AQ8IWF6 608 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 BBS7Q8IWZ6 715 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 STAG3L4Q8TBR4 150 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 DNASE1L2Q92874 299 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TRIM63Q969Q1 353 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TNIP3Q96KP6 325 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 PSKH2Q96QS6 385 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TMPRSS13Q9BYE2 586 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 C11orf49Q9H6J7 331 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 DPP3Q9NY33 737 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 PPIL1Q9Y3C6 166 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 C1orf226A1L170 272 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 B4GAT1O43505 415 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TNFRSF21O75509 655 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 DARSP14868 501 aaKnown RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RHOQP17081 205 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms