RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ADARP55265 1226 aaKnown RBP15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 SOX8P57073 446 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 SARNPP82979 210 aaKnown RBP15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 KCNJ11Q14654 390 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 CYP2A13Q16696 494 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 CCSMST1Q4G0I0 132 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 PRR30Q53SZ7 412 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 KIAA0930Q6ICG6 404 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 CNSTQ6PJW8 725 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 COX15Q7KZN9 410 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 TMEM151BQ8IW70 566 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 PRELID2Q8N945 189 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 PSMG3-AS1Q96PY0 264 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 SLC26A1Q9H2B4 701 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 ZNF552Q9H707 407 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 WDR54Q9H977 334 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 ATP13A2Q9NQ11 1180 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 SPATA7Q9P0W8 599 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 BLACEA4D250 179 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 FITM1A5D6W6 292 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 KRT87PA6NCN2 255 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 AGPSO00116 658 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 SRPX2O60687 465 aaPredicted RBP15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 CTSVO60911 334 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 NIPSNAP2O75323 286 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 IPO13O94829 963 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 MATN4O95460 622 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 OGNP20774 298 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 MMP11P24347 488 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 CXCR5P32302 372 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 MAGEA6P43360 314 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 NKG7Q16617 165 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 FAM214AQ32MH5 1076 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 FHL5Q5TD97 284 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 IGFL3Q6UXB1 125 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 LRRC8AQ8IWT6 810 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 OR2L3Q8NG85 312 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 OR2A1Q8NGT9 310 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 MIPEPQ99797 713 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 SLC29A3Q9BZD2 475 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 LRRC4CQ9HCJ2 640 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 IL1RAPL1Q9NZN1 696 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 FAM169AQ9Y6X4 670 aa15.87■□□□□ 0.13
CCDC28B-204ENST00000469003 A0A1W2PPV9 198 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 MASP2O00187 686 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 PAMP19021 973 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 VPS41P49754 854 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 VSX2P58304 361 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 GPS1Q13098 491 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 AIMP2Q13155 320 aaKnown RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 NAA25Q14CX7 972 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 TRIP13Q15645 432 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 KCTD19Q17RG1 926 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 PLEKHN1Q494U1 663 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 WASHC2DQ5SRD0 308 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 RNF44Q7L0R7 432 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 SPSB2Q99619 263 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 TSR3Q9UJK0 312 aaKnown RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 NXT1Q9UKK6 140 aaKnown RBP15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 B3GNT3Q9Y2A9 372 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 VPS9D1Q9Y2B5 631 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 CRYL1Q9Y2S2 319 aa15.86■□□□□ 0.13
CCDC28B-204ENST00000469003 AVILO75366 819 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 AGFG2O95081 481 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 KRT14P02533 472 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 ERGP11308 486 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 PKMP14618 531 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CHRM3P20309 590 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 TERF1P54274 439 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CCZ1BP86790 482 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CCZ1P86791 482 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 ANKRD22Q5VYY1 191 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 FRMPD2BQ6IN97 320 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 NEPROQ6NW34 567 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CENPUQ71F23 418 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CAND1Q86VP6 1230 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CILP2Q8IUL8 1156 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 IQCKQ8N0W5 287 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 OR9A1PQ8NGU1 263 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 TM9SF4Q92544 642 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 FAM136AQ96C01 138 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 SLC6A20Q9NP91 592 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 INTS10Q9NVR2 710 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 MAP10Q9P2G4 905 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 GALPQ9UBC7 116 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CTSFQ9UBX1 484 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 CDC23Q9UJX2 597 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 FBXL4Q9UKA2 621 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 PPP2R2CQ9Y2T4 447 aa15.85■□□□□ 0.13
CCDC28B-204ENST00000469003 NBPF19A0A087WUL8 3843 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 A0A0J9YVX5 310 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 FAM237BA0A1B0GVD1 139 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 HYKKA2RU49 373 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 OR2A25A4D2G3 310 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 VSTM2BA6NLU5 285 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ARHGEF33A8MVX0 844 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 TCP11X1B4DZS4 312 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 E5RI56 91 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 SOCS6O14544 535 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms