RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 FBXO43Q4G163 708 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 TMEM52BQ4KMG9 183 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 AGBL4Q5VU57 503 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 ZNF549Q6P9A3 640 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 CNSTQ6PJW8 725 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 SH2D5Q6ZV89 423 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 Q6ZVL8 140 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 TECPR1Q7Z6L1 1165 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 DSG4Q86SJ6 1040 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 TRABD2AQ86V40 505 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 EXOC3L1Q86VI1 746 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 CACUL1Q86Y37 369 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 TMPRSS6Q8IU80 811 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 NDUFAF2Q8N183 169 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 HOXB13Q92826 284 aaPredicted RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 SCAMP4Q969E2 229 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 FUBP1Q96AE4 644 aaKnown RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 SERAC1Q96JX3 654 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 CLPTM1LQ96KA5 538 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 MRGPRX4Q96LA9 322 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 ATP6V1G3Q96LB4 118 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 COQ10AQ96MF6 247 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 RUFY1Q96T51 708 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 MYCBPQ99417 103 aaPredicted RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 FAM167BQ9BTA0 163 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 WRAP53Q9BUR4 548 aaKnown RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 LTB4R2Q9NPC1 389 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 WASH6PQ9NQA3 447 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 FBXO6Q9NRD1 293 aaPredicted RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 SPATA6Q9NWH7 488 aaPredicted RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 OGFRQ9NZT2 677 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.5□□□□□ -1.85
MCF2-202ENST00000370573 CD84Q9UIB8 345 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 MUTYHQ9UIF7 546 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 MMP17Q9ULZ9 603 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 ASB1Q9Y576 335 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 FADS3Q9Y5Q0 445 aa3.5□□□□□ -1.85
MCF2-202ENST00000370573 LRRK1Q38SD2 2015 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 DOCK9Q9BZ29 2069 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 KANSL1LA0AUZ9 987 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TRIM49D1C9J1S8 452 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 C1QTNF3-AMACRE9PGA6 284 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 SYT5O00445 386 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 SLC16A6O15403 523 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 INHBAP08476 426 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 GABRG2P18507 467 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 XPAP23025 273 aaPredicted RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 GP5P40197 560 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 BUD31P41223 144 aaPredicted RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 RAD52P43351 418 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 LEPRP48357 1165 aaKnown RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 CSE1LP55060 971 aaKnown RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 PRAMEP78395 509 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 PDE1BQ01064 536 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TIAL1Q01085 375 aaKnown RBP eCLIP3.49□□□□□ -1.85
MCF2-202ENST00000370573 NAB1Q13506 487 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 UBXN2BQ14CS0 331 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 E2F5Q15329 346 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 ZRANB3Q5FWF4 1079 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TMEM31Q5JXX7 168 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 EOGTQ5NDL2 527 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 GRTP1Q5TC63 336 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 FAM46CQ5VWP2 391 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 ZNF776Q68DI1 518 aaPredicted RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 ZNF470Q6ECI4 717 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 AFTPHQ6ULP2 937 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 FAM151BQ6UXP7 276 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TIFABQ6ZNK6 161 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TRMT11Q7Z4G4 463 aaKnown RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 CROCCP2Q86T23 111 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 ZC3HC1Q86WB0 502 aaKnown RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 PELI3Q8N2H9 469 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 RIBC1Q8N443 379 aaPredicted RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 HDDC3Q8N4P3 179 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 DCLK2Q8N568 766 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 NAT14Q8WUY8 206 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 CDKL2Q92772 493 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 FAM131CQ96AQ9 280 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 PPP1R16AQ96I34 528 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 ZC3H10Q96K80 434 aaKnown RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 KLF6Q99612 283 aaPredicted RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 RBBP8Q99708 897 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 CPNE1Q99829 537 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 C19orf43Q9BQ61 176 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 ADI1Q9BV57 179 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 RIOK2Q9BVS4 552 aaKnown RBP3.49□□□□□ -1.85
MCF2-202ENST00000370573 ABCG8Q9H221 673 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 MED4Q9NPJ6 270 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 CD93Q9NPY3 652 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 SACM1LQ9NTJ5 587 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 PNPOQ9NVS9 261 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TMEM98Q9Y2Y6 226 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 PKP3Q9Y446 797 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 NCOR1O75376 2440 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TRBV5-4A0A0C4DH59 114 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 GLYATL1P3A0A0U1RQE8 302 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TCRBV5S2A0A599 114 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 TCRBV21S2A2A0A5A6 115 aa3.49□□□□□ -1.85
MCF2-202ENST00000370573 IGLON5A6NGN9 336 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms