RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CASP8AP2Q9UKL3 1982 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 MYOFQ9NZM1 2061 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 HPRP00739 348 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 VIPP01282 170 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ENGP17813 658 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 NUDT6P53370 316 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 IFITM3Q01628 133 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 EPS8Q12929 822 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 SLC13A2Q13183 592 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 SPOUT1Q5T280 376 aaKnown RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ZNF551Q7Z340 670 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 GPR149Q86SP6 731 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 P2RY8Q86VZ1 359 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 HIPK1Q86Z02 1210 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 PIK3C3Q8NEB9 887 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 BCL7CQ8WUZ0 217 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 MAL2Q969L2 176 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ALPK1Q96QP1 1244 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 ROGDIQ9GZN7 287 aa11.82□□□□□ -0.52
CLIP3-201ENST00000360535 C6orf62Q9GZU0 229 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 MBD1Q9UIS9 605 aaPredicted RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 INTS6Q9UL03 887 aaKnown RBP11.82□□□□□ -0.52
CLIP3-201ENST00000360535 LOC100506127A0A0U1RQW1 187 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 SEC24AO95486 1093 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 OPN1SWP03999 348 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 CLK3P49761 638 aaKnown RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 VLDLRP98155 873 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 CPZQ66K79 652 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 NIPAL1Q6NVV3 410 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 ARL14EPQ8N8R7 260 aaPredicted RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 DACH2Q96NX9 599 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 RMND5AQ9H871 391 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 KRT84Q9NSB2 600 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 FPGTO14772 594 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 UGT2B11O75310 529 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 DBTP11182 482 aaKnown RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 FXNQ16595 210 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 PTCHD3Q3KNS1 767 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 OR2T5Q6IEZ7 315 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 SNX20Q7Z614 316 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 SYT12Q8IV01 421 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 OR2T29Q8NH02 315 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 FOXJ1Q92949 421 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 KCNC2Q96PR1 638 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 ASPSCR1Q9BZE9 553 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 REXO4Q9GZR2 422 aaKnown RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 RMI1Q9H9A7 625 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 TPRKBQ9Y3C4 175 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 PCDHGA10Q9Y5H3 936 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 M0R129 80 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 CLIC1O00299 241 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 PGLSO95336 258 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 NUDT7P0C024 238 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 HIST1H2AGP0C0S8 130 aaPredicted RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 HSMCR30P0CW71 290 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 BMP4P12644 408 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 SDC1P18827 310 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 HIST1H2ADP20671 130 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 PCMT1P22061 227 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 ST13P50502 369 aaKnown RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 SFSWAPQ12872 951 aaKnown RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 TXNDC8Q6A555 127 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 CERS6Q6ZMG9 384 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 GPR156Q8NFN8 814 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 PIH1D2Q8WWB5 315 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 MYLIPQ8WY64 445 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 HIST1H2AHQ96KK5 128 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 CCDC115Q96NT0 180 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 HIST1H2AJQ99878 128 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 CPPED1Q9BRF8 314 aaPredicted RBP11.81□□□□□ -0.52
CLIP3-201ENST00000360535 H2AFJQ9BTM1 129 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 YIPF2Q9BWQ6 316 aa11.81□□□□□ -0.52
CLIP3-201ENST00000360535 COX7A2P14406 83 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 CD36P16671 472 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 IDH2P48735 452 aaKnown RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 MASP1P48740 699 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 STK19P49842 368 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ACLYP53396 1101 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ILF2Q12905 390 aaKnown RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 TOP3AQ13472 1001 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 CLCA4Q14CN2 919 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 DGUOKQ16854 277 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 TRIM71Q2Q1W2 868 aaKnown RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ZNF648Q5T619 568 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 SLC22A16Q86VW1 577 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 BEND7Q8N7W2 519 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 GLB1L3Q8NCI6 653 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 GPR26Q8NDV2 337 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 SPPL2AQ8TCT8 520 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 AUTS2Q8WXX7 1259 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ATP13A3Q9H7F0 1226 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 CLEC4EQ9ULY5 219 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 GAPDHSO14556 408 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ZDHHC11BP0C7U3 371 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 EBLN1P0CF75 366 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 POU2F1P14859 743 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ACRV1P26436 265 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 KIR3DL1P43629 444 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 FKBP1BP68106 108 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 MRPL58Q14197 206 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms