RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FAPQ12884 760 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SMU1Q2TAY7 513 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CGREF1Q99674 301 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 C17orf62Q9BQA9 187 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CD244Q9BZW8 370 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ABCG8Q9H221 673 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PRDM8Q9NQV8 689 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 GPRC5BQ9NZH0 403 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 LHX3Q9UBR4 397 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 POLR3HQ9Y535 204 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 DOPEY2Q9Y3R5 2298 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 TAF1LQ8IZX4 1826 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 MAGEA13PA6NCF6 341 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SYNDIG1LA6NDD5 238 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CPN2P22792 545 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TIMM50Q3ZCQ8 353 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM35AQ53FP2 167 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 FAM91A1Q658Y4 838 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 NADSYN1Q6IA69 706 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PTCRAQ6ISU1 281 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TRAF7Q6Q0C0 670 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CD300LGQ6UXG3 332 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CYP2R1Q6VVX0 501 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PARS2Q7L3T8 475 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 OR6C4Q8NGE1 309 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 OR13J1Q8NGT2 312 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TBCDQ9BTW9 1192 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PCED1AQ9H1Q7 454 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 EPB41L1Q9H4G0 881 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TPRKBQ9Y3C4 175 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 COPG1Q9Y678 874 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ANKRD31Q8N7Z5 1873 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 EVPLQ92817 2033 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 WASH3PC4AMC7 463 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PDE5AO76074 875 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 IFNW1P05000 195 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ATXN1LP0C7T5 689 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 HNRNPH1P31943 449 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 MPIP34949 423 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 C1DQ13901 141 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SLC5A9Q2M3M2 681 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ACSBG2Q5FVE4 666 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 C16orf87Q6PH81 154 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CYP4Z2PQ8N1L4 340 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 DEPDC4Q8N2C3 294 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 GPR26Q8NDV2 337 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PHF10Q8WUB8 498 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ART5Q96L15 291 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 DACH2Q96NX9 599 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PBX4Q9BYU1 374 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 KLHL4Q9C0H6 718 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 C1orf21Q9H246 121 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 APOBEC3BQ9UH17 382 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 FZD4Q9ULV1 537 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 DDX60LQ5H9U9 1706 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 IQCF5A8MTL0 148 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CFIP05156 583 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CHRNGP07510 517 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SEC13P55735 322 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 MINDY4Q4G0A6 757 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 LRRC73Q5JTD7 316 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SLC30A9Q6PML9 568 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PROSER1Q86XN7 944 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 HIPK1Q86Z02 1210 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SLC30A8Q8IWU4 369 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM145Q8NBT3 493 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 C10orf82Q8WW14 230 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 XAGE5Q8WWM1 108 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ELSPBP1Q96BH3 223 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 VMP1Q96GC9 406 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ADNPQ9H2P0 1102 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CXorf56Q9H5V9 222 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 NOL6Q9H6R4 1146 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CCNB1IP1Q9NPC3 277 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SUFUQ9UMX1 484 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 KIAA1551Q9HCM1 1747 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 A0A087WXM4 84 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PLA2G16P53816 162 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF77Q15935 545 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CCDC157Q569K6 752 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 CLEC6AQ6EIG7 209 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 TANGO2Q6ICL3 276 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 FCRL3Q96P31 734 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 HBEGFQ99075 208 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 UBE2ZQ9H832 354 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SMOXQ9NWM0 555 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 A0A1B0GUL6 1792 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 MAGEB17A8MXT2 336 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 C9J4A7 227 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 AREL1O15033 823 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 MID1O15344 667 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ERI3O43414 337 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ABCB1P08183 1280 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 BMP7P18075 431 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 FBXW4P57775 412 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SEMG2Q02383 582 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF763Q0D2J5 394 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 SMAD4Q13485 552 aaKnown RBP6.68□□□□□ -1.34
SF3B1-201ENST00000335508 PCLAFQ15004 111 aa6.68□□□□□ -1.34
SF3B1-201ENST00000335508 LARS2Q15031 903 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms