RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 NCDNQ9UBB6 729 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 DUSP3P51452 185 aaPredicted RBP18.09■□□□□ 0.49
PCDH1-201ENST00000287008 MTPNP58546 118 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 SLC30A6Q6NXT4 461 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 CILP2Q8IUL8 1156 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 ZZZ3Q8IYH5 903 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 GPR65Q8IYL9 337 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 CENPNQ96H22 339 aaPredicted RBP18.09■□□□□ 0.49
PCDH1-201ENST00000287008 CAMK1GQ96NX5 476 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 TEX264Q9Y6I9 313 aa18.09■□□□□ 0.49
PCDH1-201ENST00000287008 C2orf78A6NCI8 922 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 hCG_2039718K7EN88 272 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 SNPHO15079 494 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 PITX1P78337 314 aaPredicted RBP18.08■□□□□ 0.49
PCDH1-201ENST00000287008 FAM182AQ5T1J6 154 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 IKBIPQ70UQ0 350 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 ZC3H3Q8IXZ2 948 aaKnown RBP18.08■□□□□ 0.49
PCDH1-201ENST00000287008 RFKQ969G6 155 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 PIWIL1Q96J94 861 aaKnown RBP18.08■□□□□ 0.49
PCDH1-201ENST00000287008 WDR92Q96MX6 357 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 COL21A1Q96P44 957 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 GPATCH1Q9BRR8 931 aaKnown RBP18.08■□□□□ 0.49
PCDH1-201ENST00000287008 HERC2P3Q9BVR0 1158 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 TELO2Q9Y4R8 837 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 PCDHB3Q9Y5E6 796 aa18.08■□□□□ 0.49
PCDH1-201ENST00000287008 TCRBV21S2A2A0A5A6 115 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 MEIS3P2A8K0S8 358 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 CHST10O43529 356 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 GADD45GO95257 159 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 JMJD7P0C870 316 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 RPL6Q02878 288 aaKnown RBP18.08■□□□□ 0.48
PCDH1-201ENST00000287008 FAM214AQ32MH5 1076 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 LIN54Q6MZP7 749 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 THAP5Q7Z6K1 395 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 GLIS1Q8NBF1 620 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 MKKSQ9NPJ1 570 aaPredicted RBP18.08■□□□□ 0.48
PCDH1-201ENST00000287008 SLCO3A1Q9UIG8 710 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 FAM149AA5PLN7 773 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 LYNP07948 512 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 PREPP48147 710 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 ZCCHC12Q6PEW1 402 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 SLC30A8Q8IWU4 369 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 LMO3Q8TAP4 145 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 MAGEE1Q9HCI5 957 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 CTPS2Q9NRF8 586 aa18.08■□□□□ 0.48
PCDH1-201ENST00000287008 CASKO14936 926 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 TGM5O43548 720 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 ZNF823P16415 610 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 SHMT2P34897 504 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 GDF5P43026 501 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 BNIP1Q12981 228 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 SLC5A11Q8WWX8 675 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 PIGKQ92643 395 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 DERL2Q9GZP9 239 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 NSUN3Q9H649 340 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 HRASLS2Q9NWW9 162 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 SMPD3Q9NY59 655 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 CPSF4LA6NMK7 179 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 CAPN14A8MX76 684 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 LOC730098B7Z3J9 87 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 DLX3O60479 287 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 LATS1O95835 1130 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 CREB5Q02930 508 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 OLIG2Q13516 323 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 Q8N9G6 341 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 ZNF527Q8NB42 609 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 GLYATL1Q969I3 302 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 KIAA1191Q96A73 305 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 KIAA1143Q96AT1 154 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 ELOA3DA6NLF2 546 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 B4GALT2O60909 372 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 NELFEP18615 380 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 VIPR2P41587 438 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 ARFIP1P53367 373 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 SP140Q13342 867 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 ELOA3BQ3SY89 546 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 B3GNT6Q6ZMB0 384 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 ELOA3Q8NG57 546 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 CEP295NLQ96MC4 621 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 LRRC3Q9BY71 257 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 NLE1Q9NVX2 485 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 DLG5Q8TDM6 1919 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 UBE2QL1A1L167 161 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 CAPN8A6NHC0 703 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 SLC22A2O15244 555 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 RPS9P46781 194 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 TRAP1Q12931 704 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 IGSF8Q969P0 613 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 GTPBP3Q969Y2 492 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 RNF31Q96EP0 1072 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 BORCS6Q96GS4 357 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 GPR174Q9BXC1 333 aa18.07■□□□□ 0.48
PCDH1-201ENST00000287008 OAS3Q9Y6K5 1087 aaKnown RBP18.07■□□□□ 0.48
PCDH1-201ENST00000287008 A0A1W2PQU0 124 aa18.06■□□□□ 0.48
PCDH1-201ENST00000287008 MBLAC1A4D2B0 266 aaPredicted RBP18.06■□□□□ 0.48
PCDH1-201ENST00000287008 STX16-NPEPL1H3BU86 382 aa18.06■□□□□ 0.48
PCDH1-201ENST00000287008 STX16O14662 325 aa18.06■□□□□ 0.48
PCDH1-201ENST00000287008 TP73O15350 636 aa18.06■□□□□ 0.48
PCDH1-201ENST00000287008 TPST2O60704 377 aa18.06■□□□□ 0.48
PCDH1-201ENST00000287008 ZBTB11O95625 1053 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms