RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 VN1R2Q8NFZ6 395 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 BTN2A2Q8WVV5 523 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CYGBQ8WWM9 190 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 TMEM159Q96B96 161 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 NMD3Q96D46 503 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 SMOXQ9NWM0 555 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 SLC8A2Q9UPR5 921 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 PCDHB14Q9Y5E9 798 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 SLC16A8O95907 504 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 ZNF23P17027 643 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 ZNF30P17039 623 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 MAP4P27816 1152 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 MRPL19P49406 292 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 CCT8P50990 548 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 RPS14P62263 151 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 IRF8Q02556 426 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 FNDC3BQ53EP0 1204 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 PPP4R4Q6NUP7 873 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 TECPR1Q7Z6L1 1165 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CFAP206Q8IYR0 622 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 C2orf73Q8N5S3 287 aaPredicted RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 OR2T12Q8NG77 320 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 SP7Q8TDD2 431 aaPredicted RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 GLYATL1Q969I3 302 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 FBXL20Q96IG2 436 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 SLC2A11Q9BYW1 496 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 DNAJC11Q9NVH1 559 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 GPRC5BQ9NZH0 403 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 GULP1Q9UBP9 304 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 PPT2Q9UMR5 302 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 KNL1Q8NG31 2342 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 MYCLP1P12525 358 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 PFKLP17858 780 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 SDC1P18827 310 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 HTR1EP28566 365 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 MMP12P39900 470 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 GBX1Q14549 363 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 DMC1Q14565 340 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ZIK1Q3SY52 487 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 FAM78AQ5JUQ0 283 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 TRAM1L1Q8N609 369 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CENPNQ96H22 339 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 C19orf43Q9BQ61 176 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 OR2AG1Q9H205 316 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CLMPQ9H6B4 373 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CNOT11Q9UKZ1 510 aaKnown RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 SNX6Q9UNH7 406 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 KCNE1BA0A087WTH5 132 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ARNTLO00327 626 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 GSTA4O15217 222 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ACOX3O15254 700 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 TNFAIP8O95379 198 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 GSTT1P30711 240 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CYP4F3Q08477 520 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 NADK2Q4G0N4 442 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 PLEKHS1Q5SXH7 462 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ZDHHC20Q5W0Z9 365 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 FRG2Q64ET8 278 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ANKRD34AQ69YU3 496 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 OR4F3Q6IEY1 312 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 KIAA0907Q7Z7F0 614 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 GALNT10Q86SR1 603 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 THOC6Q86W42 341 aaKnown RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 TRAPPC5Q8IUR0 188 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CELF5Q8N6W0 485 aaKnown RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 DDHD1Q8NEL9 900 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 OR7A2PQ8NGA2 310 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 FRG2BQ96QU4 278 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 OR4K3Q96R72 315 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ZSCAN5AQ9BUG6 496 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 OSBPL11Q9BXB4 747 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 LMCD1Q9NZU5 365 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 LIMD1Q9UGP4 676 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 INVSQ9Y283 1065 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 WNT9AO14904 365 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 SPINT1O43278 529 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 RECQL5O94762 991 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 ETHE1O95571 254 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 SNAP29O95721 258 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 GBAP04062 536 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 GPIP06744 558 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 WASP42768 502 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 HSPA13P48723 471 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 MEF2AQ02078 507 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 SLC14A1Q13336 389 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 PLCL1Q15111 1095 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 NKG7Q16617 165 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 AASDHQ4L235 1098 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 RAET1GQ6H3X3 334 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ERAP2Q6P179 960 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 AGTRAPQ6RW13 159 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CRTC3Q6UUV7 619 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 LRRC70Q7Z2Q7 622 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CARM1Q86X55 608 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 MMAAQ8IVH4 418 aaKnown RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 HS3ST5Q8IZT8 346 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 CLEC4FQ8N1N0 589 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 GPR156Q8NFN8 814 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 PNPT1Q8TCS8 783 aaKnown RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 OSCP1Q8WVF1 389 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms