RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 HACE1Q8IYU2 909 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 IL17RCQ8NAC3 791 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 DRAXINQ8NBI3 349 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ZBTB44Q8NCP5 570 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 OR13A1Q8NGR1 328 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 THAP6Q8TBB0 222 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 GRK7Q8WTQ7 553 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 DEPDC1BQ8WUY9 529 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PTP4A1Q93096 173 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 FAM120BQ96EK7 910 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 TMEM237Q96Q45 408 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ATP6V0BQ99437 205 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PKP4Q99569 1192 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 SPXQ9BT56 116 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 RWDD1Q9H446 243 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PLK3Q9H4B4 646 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 COPS7BQ9H9Q2 264 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 LIN28AQ9H9Z2 209 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 EPB41L5Q9HCM4 733 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 SETD4Q9NVD3 440 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 E9PCH4 1651 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 BRCA1P38398 1863 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 WNK3Q9BYP7 1800 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 CACNA1GO43497 2377 aa4.71□□□□□ -1.65
SMAD4-216ENST00000593223 LAMB4A4D0S4 1761 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CLRN2A0PK11 232 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 ASPDHA6ND91 283 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 FAM90A26D6RGX4 464 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 C16orf97H3BN30 126 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CTAGE5O15320 804 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 OGG1O15527 345 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 ZNHIT1O43257 154 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 KERAO60938 352 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 MTRF1O75570 445 aaKnown RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 BEST1O76090 585 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 ATP1A1P05023 1023 aaKnown RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 RB1P06400 928 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 SRPRAP08240 638 aaKnown RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 RHOXF2BP0C7M4 288 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 ACTN1P12814 892 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 TCF7P36402 384 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 FMO5P49326 533 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CAMPP49913 170 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 HTD2P86397 168 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 SREBF2Q12772 1141 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 IKQ13123 557 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 PPP1R7Q15435 360 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 SOWAHCQ53LP3 525 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CST9Q5W186 159 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 OR7E24Q6IFN5 339 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 Q7L0L9 218 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CHST9Q7L1S5 443 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 LPCAT2Q7L5N7 544 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 TMPRSS12Q86WS5 348 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 MAML2Q8IZL2 1156 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 TAGAPQ8N103 731 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 MUC20Q8N307 709 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 HJURPQ8NCD3 748 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CCDC148Q8NFR7 591 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 SLC44A1Q8WWI5 657 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 EGLN2Q96KS0 407 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 INPP4AQ96PE3 977 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 GAD1Q99259 594 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 RHOXF2Q9BQY4 288 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 NEURL2Q9BR09 285 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CCDC94Q9BW85 323 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-216ENST00000593223 TMEM39BQ9GZU3 492 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 LRMDAQ9H2I8 198 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 MAGIXQ9H6Y5 334 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 MTMR10Q9NXD2 777 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 SEPT10Q9P0V9 454 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 CACNG4Q9UBN1 327 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 KCNG2Q9UJ96 466 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 TTC28Q96AY4 2481 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 IFT172Q9UG01 1749 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 EEA1Q15075 1411 aa4.71□□□□□ -1.66
SMAD4-216ENST00000593223 ABCC11Q96J66 1382 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 GPR75-ASB3A0A0A6YYF3 556 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 AGAP14A8MT82 685 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 A8MZ25 164 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 SGK1O00141 431 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 SH2B2O14492 632 aaPredicted RBP4.7□□□□□ -1.66
SMAD4-216ENST00000593223 DVL1O14640 695 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 MAP2K7O14733 419 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 STX6O43752 255 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 WDR1O75083 606 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 PNPP00491 289 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 ARF4P18085 180 aaPredicted RBP4.7□□□□□ -1.66
SMAD4-216ENST00000593223 UGT1A1P22309 533 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 MATR3P43243 847 aaKnown RBP eCLIP4.7□□□□□ -1.66
SMAD4-216ENST00000593223 DVL1P1P54792 670 aaPredicted RBP4.7□□□□□ -1.66
SMAD4-216ENST00000593223 DLX5P56178 289 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 AIMP1Q12904 312 aaKnown RBP4.7□□□□□ -1.66
SMAD4-216ENST00000593223 PCGF3Q3KNV8 242 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 RABL6Q3YEC7 729 aaPredicted RBP4.7□□□□□ -1.66
SMAD4-216ENST00000593223 KBTBD12Q3ZCT8 623 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 DUSP28Q4G0W2 176 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 TOR1AIP1Q5JTV8 583 aa4.7□□□□□ -1.66
SMAD4-216ENST00000593223 CCDC122Q5T0U0 273 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms