RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	TMEM221	A6NGB7	291 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796		M0R296	226 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	LDLRAD4	O15165	306 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	DDX58	O95786	925 aa	Known RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	SNAI1	O95863	264 aa	Predicted RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	GH2	P01242	217 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	PYGL	P06737	847 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	ASGR1	P07306	291 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	COX7A2	P14406	83 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	CAPN3	P20807	821 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	ELF1	P32519	619 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	PGM1	P36871	562 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	CSRP3	P50461	194 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	MLLT10	P55197	1068 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	UFM1	P61960	85 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	COG7	P83436	770 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	MECOM	Q03112	1051 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	NOTCH2	Q04721	2471 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	2.55	□□□□□ -2	3e-6	■■■□□ 19
VAPA-208	ENST00000584796	G3BP1	Q13283	466 aa	Known RBP eCLIP	2.55	□□□□□ -2	2e-6	■■■■□ 24.6
VAPA-208	ENST00000584796	TUBB2A	Q13885	445 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	TAF12	Q16514	161 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	DCST1	Q5T197	706 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	FAM180B	Q6P0A1	224 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	SLC22A25	Q6T423	547 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	CXCL17	Q6UXB2	119 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	C4orf50	Q6ZRC1	276 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	DEFB128	Q7Z7B8	93 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	RBM15B	Q8NDT2	890 aa	Known RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	DDHD1	Q8NEL9	900 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	FAM222B	Q8WU58	562 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	SLC44A1	Q8WWI5	657 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	HDAC2	Q92769	488 aa	Known RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	APBB2	Q92870	758 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	ZBTB10	Q96DT7	871 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	PPP1R13B	Q96KQ4	1090 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	ROBO3	Q96MS0	1386 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	RBM4B	Q9BQ04	359 aa	Known RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	TUBB2B	Q9BVA1	445 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	SLC26A6	Q9BXS9	759 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	SIL1	Q9H173	461 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	RSPH9	Q9H1X1	276 aa	Predicted RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	RPAP3	Q9H6T3	665 aa	Predicted RBP	2.55	□□□□□ -2
VAPA-208	ENST00000584796	RIC8A	Q9NPQ8	531 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	TCP11L1	Q9NUJ3	509 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	TMEM181	Q9P2C4	612 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	MYH15	Q9Y2K3	1946 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	CRYL1	Q9Y2S2	319 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	TTLL3	Q9Y4R7	772 aa		2.55	□□□□□ -2
VAPA-208	ENST00000584796	SDK1	Q7Z5N4	2213 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	AGRN	O00468	2067 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	EML5	Q05BV3	1969 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	FLT1	P17948	1338 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	IL16	Q14005	1332 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	MROH5	Q6ZUA9	1318 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	SALL1	Q9NSC2	1324 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	TEP1	Q99973	2627 aa	Known RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	MYO18B	Q8IUG5	2567 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	GPR75-ASB3	A0A0A6YYF3	556 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	IGKV6D-41	A0A0C4DH26	115 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796		A0A1W2PRQ8	180 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796		A6NCN8	305 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	USP17L23	D6RBM5	183 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	FAM90A26	D6RGX4	464 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796		H7C423	109 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	EIF3F	O00303	357 aa	Predicted RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	SH2B2	O14492	632 aa	Predicted RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	ANKRD28	O15084	1053 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	KCNN4	O15554	427 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	TBX10	O75333	385 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	IFIT1	P09914	478 aa	Known RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	IGHV4-38-2	P0DP08	117 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	CEACAM1	P13688	526 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	UGT1A1	P22309	533 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	CDA	P32320	146 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	UBE3A	Q05086	875 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	NEXN	Q0ZGT2	675 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	ACVR2B	Q13705	512 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	CCDC57	Q2TAC2	916 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	TWISTNB	Q3B726	338 aa	Predicted RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	KIAA1644	Q3SXP7	199 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	RABL6	Q3YEC7	729 aa	Predicted RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	KRTCAP3	Q53RY4	240 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	TCEAL5	Q5H9L2	206 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	CCDC30	Q5VVM6	783 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	SPATA1	Q5VX52	437 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	PSRC1	Q6PGN9	363 aa	Predicted RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	C16orf54	Q6UWD8	224 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	METTL7B	Q6UX53	244 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	DPPA4	Q7L190	304 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	TEX11	Q8IYF3	940 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	DCLK2	Q8N568	766 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	TMEM105	Q8N8V8	129 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	FGFBP3	Q8TAT2	258 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	ZCCHC10	Q8TBK6	192 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	PHF21A	Q96BD5	680 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	NSUN4	Q96CB9	384 aa	Known RBP	2.54	□□□□□ -2
VAPA-208	ENST00000584796	MOCOS	Q96EN8	888 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	C12orf42	Q96LP6	360 aa		2.54	□□□□□ -2
VAPA-208	ENST00000584796	KLHL15	Q96M94	604 aa		2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms