RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SDCCAG8Q86SQ7 713 aaPredicted RBP19.67■□□□□ 0.74
SHMT1-209ENST00000582653 LRRC6Q86X45 466 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 RBMXL3Q8N7X1 1067 aaKnown RBP19.67■□□□□ 0.74
SHMT1-209ENST00000582653 GSDMBQ8TAX9 411 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 SLC22A18Q96BI1 424 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 PTERQ96BW5 349 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 FER1L6-AS2Q96M78 137 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 TXLNGQ9NUQ3 528 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 IL1RAPL1Q9NZN1 696 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 GALPQ9UBC7 116 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 SRPK3Q9UPE1 567 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 CRYL1Q9Y2S2 319 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 PTRH2Q9Y3E5 179 aaKnown RBP19.67■□□□□ 0.74
SHMT1-209ENST00000582653 KPNA5O15131 536 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 NIPSNAP2O75323 286 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 C1orf105O95561 183 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 S1PR4O95977 384 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 IGHEP01854 428 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 VARSP26640 1264 aaKnown RBP19.66■□□□□ 0.74
SHMT1-209ENST00000582653 INPP5JQ15735 1006 aaPredicted RBP19.66■□□□□ 0.74
SHMT1-209ENST00000582653 FCRL6Q6DN72 434 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 MRNIPQ6NTE8 343 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 TTC23LQ6PF05 361 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 CNSTQ6PJW8 725 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 CAND1Q86VP6 1230 aaKnown RBP19.66■□□□□ 0.74
SHMT1-209ENST00000582653 MCATQ8IVS2 390 aaKnown RBP19.66■□□□□ 0.74
SHMT1-209ENST00000582653 RASGEF1CQ8N431 466 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 Q8NA96 180 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 OR2Y1Q8NGV0 311 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 LPGAT1Q92604 370 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 MAGOHBQ96A72 148 aaKnown RBP19.66■□□□□ 0.74
SHMT1-209ENST00000582653 RAD51AP1Q96B01 352 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 NDC1Q9BTX1 674 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 SLAMF7Q9NQ25 335 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 NDOR1Q9UHB4 597 aa19.66■□□□□ 0.74
SHMT1-209ENST00000582653 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.65■□□□□ 0.74
SHMT1-209ENST00000582653 PEX12O00623 359 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 PRICKLE3O43900 615 aaPredicted RBP19.65■□□□□ 0.74
SHMT1-209ENST00000582653 CNOT3O75175 753 aaKnown RBP19.65■□□□□ 0.74
SHMT1-209ENST00000582653 F7P08709 466 aaPredicted RBP19.65■□□□□ 0.74
SHMT1-209ENST00000582653 ALAS2P22557 587 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 PSMB5P28074 263 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 FOLR3P41439 243 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 UQCRFS1P47985 274 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 TYSND1Q2T9J0 566 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 NKAIN1Q4KMZ8 207 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 FHL5Q5TD97 284 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 CASC4Q6P4E1 433 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 FIGLAQ6QHK4 219 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 MRGPREQ86SM8 312 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 SPNS2Q8IVW8 549 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 DENND1AQ8TEH3 1009 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 PNPLA2Q96AD5 504 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 MFRPQ9BY79 579 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 LRRC4CQ9HCJ2 640 aa19.65■□□□□ 0.74
SHMT1-209ENST00000582653 SNRNP200O75643 2136 aaKnown RBP19.64■□□□□ 0.74
SHMT1-209ENST00000582653 BLACEA4D250 179 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 GOLGA8MH3BSY2 632 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 KLHL41O60662 606 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 MAGEA6P43360 314 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 GCGRP47871 477 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 ARSFP54793 590 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 SOX8P57073 446 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 SARNPP82979 210 aaKnown RBP19.64■□□□□ 0.73
SHMT1-209ENST00000582653 RAPSNQ13702 412 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 DCAF10Q5QP82 559 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 SLC6A19Q695T7 634 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 KIAA0930Q6ICG6 404 aaPredicted RBP19.64■□□□□ 0.73
SHMT1-209ENST00000582653 CENPUQ71F23 418 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 NACC2Q96BF6 587 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 TCF12Q99081 682 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 SLC22A11Q9NSA0 550 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 JRKLQ9Y4A0 524 aa19.64■□□□□ 0.73
SHMT1-209ENST00000582653 MASP2O00187 686 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 NRDCO43847 1150 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 ONECUT2O95948 504 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 CHRM3P20309 590 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 MCM3P25205 808 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 COILP38432 576 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-209ENST00000582653 VWA5B1Q5TIE3 1220 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 NEPROQ6NW34 567 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 IGFL3Q6UXB1 125 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 TTLL10Q6ZVT0 673 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 GALNT16Q8N428 558 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 CLEC1AQ8NC01 280 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 DLG3Q92796 817 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 ZUFSPQ96AP4 578 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 PBKQ96KB5 322 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 MIPEPQ99797 713 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 ENAMQ9NRM1 1142 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 INTS7Q9NVH2 962 aaKnown RBP19.63■□□□□ 0.73
SHMT1-209ENST00000582653 P4HTMQ9NXG6 502 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 FER1L5A0AVI2 2057 aa19.63■□□□□ 0.73
SHMT1-209ENST00000582653 NAV2Q8IVL1 2488 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 NRP2O60462 931 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ESR1P03372 595 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 PIM1P11309 404 aaPredicted RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 ITGAXP20702 1163 aa19.62■□□□□ 0.73
SHMT1-209ENST00000582653 YBX1P67809 324 aaKnown RBP19.62■□□□□ 0.73
SHMT1-209ENST00000582653 DHX34Q14147 1143 aaKnown RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms