RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FMO5P49326 533 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CLCN5P51795 746 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 NDST1P52848 882 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 SNU13P55769 128 aaKnown RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 KIAA1024LP59773 190 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 GOLGA8FQ08AF8 430 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 NIPAL4Q0D2K0 466 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 KIF5AQ12840 1032 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 IL11RAQ14626 422 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 DPCR1Q3MIW9 517 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 SPDYE7PQ495Y7 208 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 PDCD4Q53EL6 469 aaKnown RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 PLA1AQ53H76 456 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ZNF569Q5MCW4 686 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 C1orf220Q5T0J3 134 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 METRNLQ641Q3 311 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ARHGAP11AQ6P4F7 1023 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 PARM1Q6UWI2 310 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 PTCHD4Q6ZW05 846 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 MARK2Q7KZI7 788 aaKnown RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 SPATA19Q7Z5L4 167 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ACOT1Q86TX2 421 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CTAGE6Q86UF2 777 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ARID3BQ8IVW6 561 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 MFSD6LQ8IWD5 586 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CTAGE4Q8IX94 777 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 CFAP52Q8N1V2 620 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 STKLD1Q8NE28 680 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 OR6C4Q8NGE1 309 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 FGF14Q92915 247 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 RAB7BQ96AH8 199 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 TCEAL4Q96EI5 215 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ALG14Q96F25 216 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 PKMYT1Q99640 499 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 ZSWIM1Q9BR11 485 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 MECRQ9BV79 373 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 TRIM31Q9BZY9 425 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 FBXO44Q9H4M3 255 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 SMYD3Q9H7B4 428 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 KIF9Q9HAQ2 790 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 MAGEE1Q9HCI5 957 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 DMAP1Q9NPF5 467 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 TRPV5Q9NQA5 729 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 SLC2A4RGQ9NR83 387 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 WSB2Q9NYS7 404 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 CNIH4Q9P003 139 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 FAM153AQ9UHL3 310 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 INTS6Q9UL03 887 aaKnown RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 KIAA1257Q9ULG3 409 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 MRPS17Q9Y2R5 130 aaKnown RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 KCNK7Q9Y2U2 307 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 COQ4Q9Y3A0 265 aa6.02□□□□□ -1.45
VPS53-212ENST00000572259 NUP210Q8TEM1 1887 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 PTPRZ1P23471 2315 aaPredicted RBP6.02□□□□□ -1.45
VPS53-212ENST00000572259 HEPACAM2A8MVW5 462 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 F8VP50 259 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CHADO15335 359 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 VPS4BO75351 444 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 E2F6O75461 281 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 HMGA1P17096 107 aaKnown RBP6.01□□□□□ -1.45
VPS53-212ENST00000572259 GJA1P17302 382 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CD58P19256 250 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 YWHAQP27348 245 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CPOXP36551 454 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CCR2P41597 374 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 ARCN1P48444 511 aaKnown RBP6.01□□□□□ -1.45
VPS53-212ENST00000572259 RAB28P51157 221 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CCR3P51677 355 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 PTTG1IPP53801 180 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 GPC5P78333 572 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 HSD11B2P80365 405 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 INCA1Q0VD86 236 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 FUT11Q495W5 492 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 SPATS1Q496A3 300 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 FAM78AQ5JUQ0 283 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CACHD1Q5VU97 1274 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 SHEQ5VZ18 495 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 SPOPLQ6IQ16 392 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 ZCCHC12Q6PEW1 402 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.01□□□□□ -1.45
VPS53-212ENST00000572259 ZYG11AQ6WRX3 759 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 RBM43Q6ZSC3 357 aaKnown RBP6.01□□□□□ -1.45
VPS53-212ENST00000572259 TADA2BQ86TJ2 420 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 TMC8Q8IU68 726 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 CMTM8Q8IZV2 173 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 SFRP1Q8N474 314 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 MAB21L3Q8N8X9 362 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 RBM15BQ8NDT2 890 aaKnown RBP6.01□□□□□ -1.45
VPS53-212ENST00000572259 FAM46DQ8NEK8 389 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 BPIFB1Q8TDL5 484 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 OVCA2Q8WZ82 227 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 DNASE1L2Q92874 299 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 EXTL1Q92935 676 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 SLC35C1Q96A29 364 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 HDAC11Q96DB2 347 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 MSANTD3Q96H12 275 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 PRR11Q96HE9 360 aaPredicted RBP6.01□□□□□ -1.45
VPS53-212ENST00000572259 TRIB1Q96RU8 372 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 NEU1Q99519 415 aa6.01□□□□□ -1.45
VPS53-212ENST00000572259 HNRNPABQ99729 332 aaKnown RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms