RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 E7ENX8 843 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 TAF4O00268 1085 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 MATN2O00339 956 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 HCRTR1O43613 425 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 TLX3O43711 291 aaPredicted RBP18.86■□□□□ 0.61
CLN3-225ENST00000566824 KDM1AO60341 852 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 NRP2O60462 931 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 CD1DP15813 335 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 MC2RQ01718 297 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 TAP2Q03519 686 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 ILF2Q12905 390 aaKnown RBP18.86■□□□□ 0.61
CLN3-225ENST00000566824 SP140Q13342 867 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 OR4D1Q15615 310 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 KIAA1614Q5VZ46 1190 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 OR2A1Q8NGT9 310 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 MCOLN3Q8TDD5 553 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.86■□□□□ 0.615e-8■■■■■ 65.3
CLN3-225ENST00000566824 PTERQ96BW5 349 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 MIPEPQ99797 713 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 ACAT2Q9BWD1 397 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 DERL2Q9GZP9 239 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 FAM60AQ9NP50 221 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 C1GALT1Q9NS00 363 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 IGSF5Q9NSI5 407 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 SLC39A1Q9NY26 324 aa18.86■□□□□ 0.61
CLN3-225ENST00000566824 AHCTF1Q8WYP5 2266 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 DMXL2Q8TDJ6 3036 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 A0A0J9YY10 115 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 B4E171 279 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 DXOO77932 396 aaKnown RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 ZBTB11O95625 1053 aaPredicted RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 C2P06681 752 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 CYP2A7P20853 494 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 HSD17B3P37058 310 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 TSPAN7P41732 249 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 KCNC1P48547 511 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 TSTA3Q13630 321 aaPredicted RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 CSHL1Q14406 222 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 GPR19Q15760 415 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 SLC5A12Q1EHB4 618 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 IGF2-ASQ6U949 168 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 RAPH1Q70E73 1250 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 CENPLQ8N0S6 344 aaPredicted RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 D2HGDHQ8N465 521 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 KCTD4Q8WVF5 259 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 CNTNAP3BQ96NU0 1288 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 RAB11FIP5Q9BXF6 653 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 CNTNAP3Q9BZ76 1288 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 ATG10Q9H0Y0 220 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 CCDC86Q9H6F5 360 aaKnown RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 ABCF3Q9NUQ8 709 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 AKAP7Q9P0M2 348 aaPredicted RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 CTNNAL1Q9UBT7 734 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 LNPEPQ9UIQ6 1025 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 B3GALT1Q9Y5Z6 326 aa18.85■□□□□ 0.61
CLN3-225ENST00000566824 ANKRD11Q6UB99 2663 aaPredicted RBP18.85■□□□□ 0.61
CLN3-225ENST00000566824 FOXO6A8MYZ6 492 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 TRIM49D1C9J1S8 452 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 GUCA1CO95843 209 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 CTSBP07858 339 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 MAGP20916 626 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 CRABP2P29373 138 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 RBMS1P29558 406 aaKnown RBP18.84■□□□□ 0.61
CLN3-225ENST00000566824 OAS2P29728 719 aaKnown RBP18.84■□□□□ 0.61
CLN3-225ENST00000566824 SLC5A2P31639 672 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 MAGEA12P43365 314 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 HSD11B2P80365 405 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 FOXM1Q08050 763 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 COL9A2Q14055 689 aaPredicted RBP18.84■□□□□ 0.61
CLN3-225ENST00000566824 ARHGAP19Q14CB8 494 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 SF1Q15637 639 aaKnown RBP18.84■□□□□ 0.61
CLN3-225ENST00000566824 C18orf21Q32NC0 220 aaPredicted RBP18.84■□□□□ 0.61
CLN3-225ENST00000566824 TBC1D25Q3MII6 688 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 FCRL6Q6DN72 434 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 ADGRD1Q6QNK2 874 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 CDHR3Q6ZTQ4 885 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 SYTL1Q8IYJ3 562 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 SMPDL3AQ92484 453 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 NXNL1Q96CM4 212 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 CCDC138Q96M89 665 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 OR6C1Q96RD1 312 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 SOHLH2Q9NX45 425 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 ZNF180Q9UJW8 692 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 RAB21Q9UL25 225 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 SH2B3Q9UQQ2 575 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 BTRCQ9Y297 605 aa18.84■□□□□ 0.61
CLN3-225ENST00000566824 TIAF1O95411 115 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 SERPINB8P50452 374 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 SERPINB9P50453 376 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 AGTRAPQ6RW13 159 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 CLEC14AQ86T13 490 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 KMT5CQ86Y97 462 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 PLD6Q8N2A8 252 aaKnown RBP18.83■□□□□ 0.61
CLN3-225ENST00000566824 RAB42Q8N4Z0 105 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 C19orf47Q8N9M1 422 aaKnown RBP18.83■□□□□ 0.61
CLN3-225ENST00000566824 OR2L3Q8NG85 312 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 OR2W6PQ8NHA6 318 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 ANKRD7Q92527 254 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 ISL2Q96A47 359 aa18.83■□□□□ 0.61
CLN3-225ENST00000566824 TAAR9Q96RI9 348 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms