RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 LRCH1Q9Y2L9 728 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 OR2AG2A6NM03 316 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 AREL1O15033 823 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 IGLV3-19P01714 112 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 KRT6AP02538 564 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 KRT6BP04259 564 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 GSTM1P09488 218 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 TDGF1P13385 188 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 TCN1P20061 433 aaPredicted RBP17.31■□□□□ 0.36
SNX1-208ENST00000559844 ACSL1P33121 698 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 MSX2P35548 267 aaPredicted RBP17.31■□□□□ 0.36
SNX1-208ENST00000559844 KRT6CP48668 564 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 FNTBP49356 437 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 SLC7A2P52569 658 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 UFM1P61960 85 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 GSTM4Q03013 218 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 PRKG2Q13237 762 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 GGTA1PQ4G0N0 100 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 RNF111Q6ZNA4 994 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 TRIM46Q7Z4K8 759 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 RASGRP3Q8IV61 690 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 PQLC1Q8N2U9 271 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 FAM160A2Q8N612 972 aaPredicted RBP17.31■□□□□ 0.36
SNX1-208ENST00000559844 FRMD1Q8N878 549 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 GLMNQ92990 594 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 CCM2Q9BSQ5 444 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 WRAP53Q9BUR4 548 aaKnown RBP17.31■□□□□ 0.36
SNX1-208ENST00000559844 ZCCHC2Q9C0B9 1178 aaKnown RBP17.31■□□□□ 0.36
SNX1-208ENST00000559844 BTBD1Q9H0C5 482 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 ACTR8Q9H981 624 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 EIF3LQ9Y262 564 aaKnown RBP17.31■□□□□ 0.36
SNX1-208ENST00000559844 RNF11Q9Y3C5 154 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 FADS3Q9Y5Q0 445 aa17.31■□□□□ 0.36
SNX1-208ENST00000559844 PRR23AA6NEV1 266 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 PRORSD1PA6NEY8 169 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 MANBAO00462 879 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 PLRG1O43660 514 aaKnown RBP17.3■□□□□ 0.36
SNX1-208ENST00000559844 NPPAP01160 153 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 MAP4P27816 1152 aaKnown RBP17.3■□□□□ 0.36
SNX1-208ENST00000559844 SLC6A12P48065 614 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 MRPS22P82650 360 aaKnown RBP17.3■□□□□ 0.36
SNX1-208ENST00000559844 TMEM115Q12893 351 aaPredicted RBP17.3■□□□□ 0.36
SNX1-208ENST00000559844 IZUMO2Q6UXV1 221 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 SPATA24Q86W54 205 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 ZFAND4Q86XD8 727 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 RASGEF1AQ8N9B8 481 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 USP7Q93009 1102 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 TMEM159Q96B96 161 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 FBXL8Q96CD0 374 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 LRRC58Q96CX6 371 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 ECSITQ9BQ95 431 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 KLHL4Q9C0H6 718 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 FBXO4Q9UKT5 387 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 ZNF490Q9ULM2 529 aaPredicted RBP17.3■□□□□ 0.36
SNX1-208ENST00000559844 INVSQ9Y283 1065 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 CCL27Q9Y4X3 112 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 PIKFYVEQ9Y2I7 2098 aa17.3■□□□□ 0.36
SNX1-208ENST00000559844 CCDC163A0A0D9SF12 145 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 PEX1O43933 1283 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 PCDH8O95206 1070 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 CD6P30203 668 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 ZFP36L2P47974 494 aaKnown RBP17.29■□□□□ 0.36
SNX1-208ENST00000559844 NFYCQ13952 458 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 IMPG1Q17R60 797 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 TMEM52BQ4KMG9 183 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 IL23RQ5VWK5 629 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 CYP20A1Q6UW02 462 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 ABCA7Q8IZY2 2146 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 FAM156AQ8NDB6 213 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 NUS1Q96E22 293 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 TOE1Q96GM8 510 aaKnown RBP17.29■□□□□ 0.36
SNX1-208ENST00000559844 SGK2Q9HBY8 427 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 ASIC5Q9NY37 505 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 IGHV1OR15-9A0A0B4J2B8 117 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 FFAR3O14843 346 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 GPR42O15529 346 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 AP1G1O43747 822 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 C8BP07358 591 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 HSD17B1P14061 328 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 SLC2A4P14672 509 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 OXTRP30559 389 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 GNPDA1P46926 289 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 CREB5Q02930 508 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 USP39Q53GS9 565 aaKnown RBP17.29■□□□□ 0.36
SNX1-208ENST00000559844 ZNF648Q5T619 568 aaPredicted RBP17.29■□□□□ 0.36
SNX1-208ENST00000559844 PRR23BQ6ZRT6 265 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 KBTBD2Q8IY47 623 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 BEND7Q8N7W2 519 aaPredicted RBP17.29■□□□□ 0.36
SNX1-208ENST00000559844 PROKR1Q8TCW9 393 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 ATL1Q8WXF7 558 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 SPACA7Q96KW9 195 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 TEX37Q96LM6 180 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 BATF3Q9NR55 127 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 DNAJC11Q9NVH1 559 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 SNX6Q9UNH7 406 aa17.29■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3DA0A087WVF3 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3IA0A087WXS9 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3EA0A087X179 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3KA0A087X1G2 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 C15orf38-AP3S2A0A0A6YYH1 394 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms