RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 USP27XA6NNY8 438 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 C2orf74A8MZ97 194 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 ANKRD66B4E2M5 251 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 GPR89AB7ZAQ6 455 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 H7C1Q1 480 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 ADAM10O14672 748 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CDC40O60508 579 aaKnown RBP eCLIP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 UGT1A9O60656 530 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 GFPT2O94808 682 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HTR3BO95264 441 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PEX11BO96011 259 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HPP00738 406 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PRLP01236 227 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RAF1P04049 648 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HSP90AA1P07900 732 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 SLC35G4P0C7Q5 338 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 GPR89BP0CG08 455 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 ITGAMP11215 1152 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 IGFBP2P18065 325 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 UGT1A6P19224 532 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 ITGAXP20702 1163 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 UGT1A1P22309 533 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CA4P22748 312 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 MMP8P22894 467 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CXCR2P25025 360 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 EEF1DP29692 281 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CHRNB4P30926 498 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HOXC12P31275 282 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HTR7P34969 479 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 MTIF2P46199 727 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 NSFP46459 744 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 OR1D4P47884 311 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RAB28P51157 221 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF143P52747 638 aaPredicted RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CTSCP53634 463 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CDH6P55285 790 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 EEF1A2Q05639 463 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CACNG1Q06432 222 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PMPCAQ10713 525 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PRKG2Q13237 762 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 POU4F3Q15319 338 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RALGPS1Q5JS13 557 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 FNBP1LQ5T0N5 605 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 FAM182AQ5T1J6 154 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 FCRLBQ6BAA4 426 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 TXNRD3NBQ6F5E7 133 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 TMEM211Q6ICI0 200 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 DNAJC24Q6P3W2 148 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 DCUN1D2Q6PH85 259 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CNSTQ6PJW8 725 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 VHLLQ6RSH7 139 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 TMCO3Q6UWJ1 677 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 NEK10Q6ZWH5 1172 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HDXQ7Z353 690 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CD163Q86VB7 1156 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 P3H2Q8IVL5 708 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CFAP206Q8IYR0 622 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 GHDCQ8N2G8 530 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RASGEF1AQ8N9B8 481 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 C19orf47Q8N9M1 422 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 THAP3Q8WTV1 239 aaPredicted RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PHF10Q8WUB8 498 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PSMF1Q92530 271 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RND1Q92730 232 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 NACC2Q96BF6 587 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 EID2BQ96D98 161 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 PLPPR2Q96GM1 343 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RBM41Q96IZ5 413 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 DMRTA2Q96SC8 542 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 TM9SF2Q99805 663 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 TUBGCP2Q9BSJ2 902 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CNPY3Q9BT09 278 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 SNRNP25Q9BV90 132 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 TDRD1Q9BXT4 1180 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 HES7Q9BYE0 225 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 POLR1EQ9GZS1 481 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 KIR3DX1Q9H7L2 352 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 UGT1A7Q9HAW7 530 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 UGT1A10Q9HAW8 530 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 UGT1A8Q9HAW9 530 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 MRM3Q9HC36 420 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 SIX2Q9NPC8 291 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RASSF1Q9NS23 344 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 ETNK2Q9NVF9 386 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 RBM22Q9NW64 420 aaKnown RBP eCLIP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CWC15Q9P013 229 aaKnown RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 KLHL42Q9P2K6 505 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CTSFQ9UBX1 484 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 POLR3KQ9Y2Y1 108 aaPredicted RBP4.56□□□□□ -1.68
LIMS1-214ENST00000542845 CPAMD8Q8IZJ3 1885 aa4.56□□□□□ -1.68
LIMS1-214ENST00000542845 FN1P02751 2386 aaKnown RBP4.55□□□□□ -1.68
LIMS1-214ENST00000542845 FLNAP21333 2647 aaKnown RBP4.55□□□□□ -1.68
LIMS1-214ENST00000542845 A0A1B0GTH9 108 aa4.55□□□□□ -1.68
LIMS1-214ENST00000542845 RGSL1A5PLK6 1076 aa4.55□□□□□ -1.68
LIMS1-214ENST00000542845 SIGLEC16A6NMB1 481 aa4.55□□□□□ -1.68
LIMS1-214ENST00000542845 LINC01387J3KSC0 135 aa4.55□□□□□ -1.68
LIMS1-214ENST00000542845 MATN2O00339 956 aa4.55□□□□□ -1.68
LIMS1-214ENST00000542845 PRPSAP2O60256 369 aa4.55□□□□□ -1.68
LIMS1-214ENST00000542845 KLK8O60259 260 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms