RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 USP53Q70EK8 1073 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ISCA2Q86U28 154 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 BPHLQ86WA6 291 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ZNF761Q86XN6 746 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ADGRF3Q8IZF5 1079 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 EPS8L3Q8TE67 593 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ZUFSPQ96AP4 578 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 PGM2Q96G03 612 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 LIN37Q96GY3 246 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 EGFL8Q99944 293 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 HAUS8Q9BT25 410 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 TWSG1Q9GZX9 223 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 IQCGQ9H095 443 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 CCDC177Q9NQR7 707 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 SEMA5BQ9P283 1151 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ANKMY1Q9P2S6 941 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 POMT2Q9UKY4 750 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 TNPO3Q9Y5L0 923 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 PKD1L2Q7Z442 2459 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ASPMQ8IZT6 3477 aa16.95■□□□□ 0.3
CLSTN3-210ENST00000540931 ISM1B1AKI9 464 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 TARM1B6A8C7 271 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 ZBTB11O95625 1053 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 TPBGLP0DKB5 382 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 THRAP10827 490 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 HOXB3P14651 431 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 H2AFXP16104 143 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 POLR2CP19387 275 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 SPINK2P20155 84 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 TAC1P20366 129 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 CMPK1P30085 196 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 CSTF2P33240 577 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 RPA3P35244 121 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 ARL4DP49703 201 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 TSNQ15631 228 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 ISXQ2M1V0 245 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 CCDC153Q494R4 210 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 SPESP1Q6UW49 350 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 CLEC14AQ86T13 490 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 SLITRK4Q8IW52 837 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 HOMEZQ8IX15 550 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 CENPLQ8N0S6 344 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 AGBL5Q8NDL9 886 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 RSC1A1Q92681 617 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 NXNL1Q96CM4 212 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 CCDC126Q96EE4 140 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 SMC6Q96SB8 1091 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 MENTQ9BUN1 341 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 B3GNT4Q9C0J1 378 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 MRPL46Q9H2W6 279 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 IGSF5Q9NSI5 407 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 ACTR10Q9NZ32 417 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 OGFRQ9NZT2 677 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 TSR3Q9UJK0 312 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 ACTL7BQ9Y614 415 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 RP1P56715 2156 aa16.94■□□□□ 0.3
CLSTN3-210ENST00000540931 ASXL3Q9C0F0 2248 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 NPEPPSL1A6NEC2 478 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 SMIM23A6NLE4 172 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 E7ENX8 843 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 CDC7O00311 574 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 RASSF9O75901 435 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 TOP3BO95985 862 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 CDH3P22223 829 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 PRDX3P30048 256 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 TAP2Q03519 686 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 ZNF844Q08AG5 666 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 CASP8Q14790 479 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 CEP85LQ5SZL2 805 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 CACHD1Q5VU97 1274 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 NKAIN2Q5VXU1 208 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 AGTRAPQ6RW13 159 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 ARHGAP22Q7Z5H3 698 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 LSMEM2Q8N112 164 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 LMNTD1Q8N9Z9 388 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 PDPRQ8NCN5 879 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 MZB1Q8WU39 189 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 ZNF480Q8WV37 535 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 KCTD4Q8WVF5 259 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 ZIM3Q96PE6 472 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 TGM7Q96PF1 710 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 PITPNM3Q9BZ71 974 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 ZNF768Q9H5H4 540 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 MKS1Q9NXB0 559 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 CD274Q9NZQ7 290 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 STOX2Q9P2F5 926 aaPredicted RBP16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 ADAMTS6Q9UKP5 1117 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 UNC13CQ8NB66 2214 aa16.93■□□□□ 0.3
CLSTN3-210ENST00000540931 AKAP13Q12802 2813 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 CCDC187A0A096LP49 1063 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 PRAMEF33A0A0G2JMD5 474 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 IGHV5-10-1A0A0J9YXX1 117 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 A0A0J9YY10 115 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 BTN3A3O00478 584 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 COPEO14579 308 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 SMIM24O75264 130 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 CSO75390 466 aaKnown RBP16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 MSL3P1P0C860 447 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 PYGBP11216 843 aa16.92■□□□□ 0.3
CLSTN3-210ENST00000540931 KRT4P19013 534 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms