RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SLCO3A1Q9UIG8 710 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SERTAD3Q9UJW9 196 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 CDH7Q9ULB5 785 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 A0A1W2PQU0 124 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 ALOX5P09917 674 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 YAP1P46937 504 aaKnown RBP13.78□□□□□ -0.2
USP3-204ENST00000540797 CLCN7P51798 805 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 CRISP3P54108 245 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 NDUFAF6Q330K2 333 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 RINLQ6ZS11 566 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 KRT77Q7Z794 578 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SLC39A11Q8N1S5 342 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 PIGKQ92643 395 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 IMP4Q96G21 291 aaKnown RBP13.78□□□□□ -0.2
USP3-204ENST00000540797 KLF15Q9UIH9 416 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 IRGMA1A4Y4 181 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 TP73O15350 636 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 TCEA3O75764 348 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 NTSR1P30989 418 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 MSS51Q4VC12 460 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 EIPR1Q53HC9 387 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 HEATR4Q86WZ0 1026 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SLC5A11Q8WWX8 675 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SMPDL3BQ92485 455 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SLC29A3Q9BZD2 475 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 CCNB1IP1Q9NPC3 277 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 ZDHHC7Q9NXF8 308 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 CD207Q9UJ71 328 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 IKZF2Q9UKS7 526 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 ALOX12P18054 663 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 GDF5P43026 501 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 PON2Q15165 354 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 UBR2Q8IWV8 1755 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 TTC9BQ8N6N2 239 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 DNAJB8Q8NHS0 232 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 PHOSPHO2Q8TCD6 241 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 HHIPL1Q96JK4 782 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 TOX2Q96NM4 488 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 LCHNA4D1U4 455 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 PRORSD1PA6NEY8 169 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 ALPPP05187 535 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 IGFBP5P24593 272 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 MYL9P24844 172 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 TTKP33981 857 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 CDK9P50750 372 aaKnown RBP13.77□□□□□ -0.2
USP3-204ENST00000540797 LRRTM3Q86VH5 581 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 RIIAD1A6NNX1 92 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 LOC730098B7Z3J9 87 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 ADAMDEC1O15204 470 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 GPX6P59796 221 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 GOLGA7Q7Z5G4 137 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 TRAM1L1Q8N609 369 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 DENND1AQ8TEH3 1009 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 GLYATL1Q969I3 302 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 CASD1Q96PB1 797 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 EPB41L1Q9H4G0 881 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 PNPLA3Q9NST1 481 aa13.77□□□□□ -0.2
USP3-204ENST00000540797 CXCR6O00574 342 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 POLR2CP19387 275 aaPredicted RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 DUSP3P51452 185 aaPredicted RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 MED22Q15528 200 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 IFI44LQ53G44 452 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 TMIGD1Q6UXZ0 262 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 TMEM130Q8N3G9 435 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 NATD1Q8N6N6 113 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 ZNF784Q8NCA9 323 aaPredicted RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 TRPV3Q8NET8 790 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 HCAR2Q8TDS4 363 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 KCNJ9Q92806 393 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 REXO4Q9GZR2 422 aaKnown RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 CXorf56Q9H5V9 222 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 GEMIN8Q9NWZ8 242 aaKnown RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 STON1Q9Y6Q2 735 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 NAV1Q8NEY1 1877 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 PEX12O00623 359 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 DLX3O60479 287 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 C4BPBP20851 252 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 CDH12P55289 794 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 DPYSQ14117 519 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 TCEAL1Q15170 157 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 SLC9B1Q4ZJI4 515 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 PLEKHS1Q5SXH7 462 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 CXXC5Q7LFL8 322 aaKnown RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 TMEM25Q86YD3 366 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 C2CD4AQ8NCU7 369 aaPredicted RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 OR7A2PQ8NGA2 310 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 FAM110BQ8TC76 370 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 RBM4BQ9BQ04 359 aaKnown RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 RBM4Q9BWF3 364 aaKnown RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 TBL1XR1Q9BZK7 514 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 AP4B1Q9Y6B7 739 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 TMCC2O75069 709 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 HOXC12P31275 282 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 MTPNP58546 118 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 RAB8AP61006 207 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 SLC29A4Q7RTT9 530 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 IPCEF1Q8WWN9 437 aaPredicted RBP13.77□□□□□ -0.21
USP3-204ENST00000540797 ZHX1-C8orf76Q96EF9 292 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 KCNS3Q9BQ31 491 aa13.77□□□□□ -0.21
USP3-204ENST00000540797 SUSD2Q9UGT4 822 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms