RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MYLKQ15746 1914 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 A0A1W2PQ72 361 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 DSCR3O14972 297 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 OGNP20774 298 aaKnown RBP12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 TIAL1Q01085 375 aaKnown RBP eCLIP12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 NPRL3Q12980 569 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 ERAP2Q6P179 960 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF605Q86T29 641 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 FAM20CQ8IXL6 584 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 NATD1Q8N6N6 113 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 EFHBQ8N7U6 833 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 MMP28Q9H239 520 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 RANGRFQ9HD47 186 aaPredicted RBP12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 CRNNQ9UBG3 495 aaPredicted RBP12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 NUFIP1Q9UHK0 495 aaKnown RBP12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 VPS4AQ9UN37 437 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF451Q9Y4E5 1061 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 MCM3APO60318 1980 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 CCDC182A6NF36 153 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 KIAA0513O60268 411 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 IL6P05231 212 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 STSP08842 583 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 RUNX1T1Q06455 604 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 CAMK2GQ13555 558 aaPredicted RBP12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF438Q7Z4V0 828 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 VTCN1Q7Z7D3 282 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 SCN4BQ8IWT1 228 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 TIGARQ9NQ88 270 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 SPEF1Q9Y4P9 236 aa12.54□□□□□ -0.4
SFSWAP-209ENST00000540469 SLC12A8A0AV02 714 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 OR6C70A6NIJ9 312 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 E2F3O00716 465 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 TLR5O60602 858 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 LRATO95237 230 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 NAT2P11245 290 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 COL6A1P12109 1028 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 PCSK1P29120 753 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ADCYAP1R1P41586 468 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 HSPA7P48741 367 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 UGT2B15P54855 530 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GALK2Q01415 458 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 FCHO2Q0JRZ9 810 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 CSTF3Q12996 717 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GTF2H2Q13888 395 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GTF2H2CQ6P1K8 395 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 SYCE2Q6PIF2 218 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 DOK6Q6PKX4 331 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 LYPD8Q6UX82 237 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GLT6D1Q7Z4J2 308 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 LINC01465Q8N7H1 131 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 FYTTD1Q96QD9 318 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF717Q9BY31 904 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 IPPQ9Y573 584 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 HS3ST4Q9Y661 456 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 MEIOCA2RUB1 952 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 SLITRK5O94991 958 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 OTCP00480 354 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 FGF1P05230 155 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ABCB1P08183 1280 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 PKMP14618 531 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ACVR2AP27037 513 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 TIE1P35590 1138 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 P2RX3P56373 397 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 MAD2L1Q13257 205 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 SLAMF1Q13291 335 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 RUNDC3AQ59EK9 446 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GOLGA7Q7Z5G4 137 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 NOXA1Q86UR1 476 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 CCDC28AQ8IWP9 274 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 TSSK3Q96PN8 268 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 TTPALQ9BTX7 342 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 TRIM62Q9BVG3 475 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 SLA2Q9H6Q3 261 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 THUMPD1Q9NXG2 353 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GPR83Q9NYM4 423 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 NPAP1Q9NZP6 1156 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ZNF490Q9ULM2 529 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 CFL2Q9Y281 166 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GRIP1Q9Y3R0 1128 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 PTCH2Q9Y6C5 1203 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 MN1Q10571 1320 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 C12orf71A8MTZ7 269 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 M0R082 166 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ANKRD28O15084 1053 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ULK1O75385 1050 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 ITGB1P05556 798 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 HMBSP08397 361 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 GNPDA1P46926 289 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 SLC7A5P2Q9GIP4 190 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 POLR1EQ9GZS1 481 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 RERGLQ9H628 205 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 AP3M1Q9Y2T2 418 aa12.53□□□□□ -0.4
SFSWAP-209ENST00000540469 CASTOR2A6NHX0 329 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 OR1I1O60431 355 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 TSC22D2O75157 780 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 SLC25A27O95847 323 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 CSF2P04141 144 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 HLA-DPA1P20036 260 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 GRK5P34947 590 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 CDKN1CP49918 316 aaPredicted RBP12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms