RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SYTL1Q8IYJ3 562 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 C2orf73Q8N5S3 287 aaPredicted RBP18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 AVL9Q8NBF6 648 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OR6Y1Q8NGX8 325 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OR56A3Q8NH54 315 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CKAP2Q8WWK9 683 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 LCN9Q8WX39 176 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 C1QTNF3Q9BXJ4 246 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 STN1Q9H668 368 aaKnown RBP18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TDRD6O60522 2096 aaKnown RBP18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 KDM1AO60341 852 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 STK16O75716 305 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CD59P13987 128 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PLCL1Q15111 1095 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PDK4Q16654 411 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 DBX2Q6ZNG2 339 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CCNYL1Q8N7R7 359 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OR4E2Q8NGC2 313 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 APOLD1Q96LR9 279 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 NSUN5Q96P11 429 aaKnown RBP18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 RAB11FIP5Q9BXF6 653 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 INTS7Q9NVH2 962 aaKnown RBP18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OGFRQ9NZT2 677 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PCDHGB2Q9Y5G2 931 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TNPO3Q9Y5L0 923 aaKnown RBP18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 RNF215Q9Y6U7 377 aa18.32■□□□□ 0.52
TNFRSF1A-213ENST00000540022 LY6G6EA0A0G2JKS1 128 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 E2F3O00716 465 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CCNT2O60583 730 aaKnown RBP18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SUPT7LO94864 414 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SHMT2P34897 504 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 HSD17B2P37059 387 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TBPL1P62380 186 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ASPHQ12797 758 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 BIRC2Q13490 618 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SUZ12Q15022 739 aaKnown RBP18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TTC19Q6DKK2 380 aaPredicted RBP18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SUSD1Q6UWL2 747 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 AMIGO1Q86WK6 493 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 RAB42Q8N4Z0 105 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 FAM181AQ8N9Y4 354 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OR2L8Q8NGY9 312 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PPP1R14CQ8TAE6 165 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 HMGCLL1Q8TB92 370 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SREK1Q8WXA9 508 aaKnown RBP18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ZNF75CPQ92670 426 aaPredicted RBP18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 MED8Q96G25 268 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TBC1D10AQ9BXI6 508 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PITPNM3Q9BZ71 974 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SRMSQ9H3Y6 488 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 LRIT1Q9P2V4 623 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PCTPQ9UKL6 214 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 PADI4Q9UM07 663 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 U3KQA8 63 aa18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ZFC3H1O60293 1989 aaKnown RBP18.31■□□□□ 0.52
TNFRSF1A-213ENST00000540022 A0A1W2PPV9 198 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 K7EPI3 171 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 WDR47O94967 919 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SERPINE1P05121 402 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CCR10P46092 362 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CDH13P55290 713 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TSTA3Q13630 321 aaPredicted RBP18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ATG14Q6ZNE5 492 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 MTERF4Q7Z6M4 381 aaKnown RBP18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 KLHDC8AQ8IYD2 350 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ZNF483Q8TF39 744 aaPredicted RBP18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SH3KBP1Q96B97 665 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OR4K3Q96R72 315 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SGPP1Q9BX95 441 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 GSTO2Q9H4Y5 243 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SLC32A1Q9H598 525 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 MANSC1Q9H8J5 431 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 UCK1Q9HA47 277 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ZBTB26Q9HCK0 441 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ABCF3Q9NUQ8 709 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OPTCQ9UBM4 332 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SLC22A14Q9Y267 594 aa18.3■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ZNF839A8K0R7 811 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 BTN3A3O00478 584 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 NUDT21O43809 227 aaKnown RBP18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 KCNK5O95279 499 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ADRB1P08588 477 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 GLB1P16278 677 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TSPAN8P19075 237 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ARRB2P32121 409 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 BST1Q10588 318 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CAPN13Q6MZZ7 669 aaPredicted RBP18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 LRRC70Q7Z2Q7 622 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 THOC6Q86W42 341 aaKnown RBP18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TRIM42Q8IWZ5 723 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ADGRF3Q8IZF5 1079 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TEX9Q8N6V9 391 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SMPDL3AQ92484 453 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 MAGEB18Q96M61 343 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SLC38A3Q99624 504 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ZNF395Q9H8N7 513 aaPredicted RBP18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CCDC177Q9NQR7 707 aaPredicted RBP18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 OR6C2Q9NZP2 312 aa18.29■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SPEGQ15772 3267 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms