RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RGMAQ96B86 450 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CDKN2AIPNLQ96HQ2 116 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF224Q9NZL3 707 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 CDH22Q9UJ99 828 aa12.87□□□□□ -0.35
PTPRF-215ENST00000496447 HAS3O00219 553 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 POP7O75817 140 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 ADH1BP00325 375 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 KLK3P07288 261 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PTGIRP43119 386 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 CRISP3P54108 245 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF311Q5JNZ3 666 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 LY6G5CQ5SRR4 150 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 BICRALQ6AI39 1079 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 CXorf57Q6NSI4 855 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 SLC13A3Q8WWT9 602 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 DSN1Q9H410 356 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 IFT172Q9UG01 1749 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PRORSD1PA6NEY8 169 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 CLUP10909 449 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 SLC7A1P30825 629 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PPP2R2BQ00005 443 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 TRMT10BQ6PF06 316 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 ZBTB46Q86UZ6 589 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 Q8N9G6 341 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 OR4C6Q8NH72 309 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 TTYH3Q9C0H2 523 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 SP140LQ9H930 580 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF304Q9HCX3 659 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 SSU72Q9NP77 194 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PFDN2Q9UHV9 154 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 ROBO1Q9Y6N7 1651 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 A0A1W2PRB8 838 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 CPSF4LA6NMK7 179 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PITPNM1O00562 1244 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 ERI3O43414 337 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 HLA-EP13747 358 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 CSNK2A2P19784 350 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 GNALP38405 381 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 IFI44LQ53G44 452 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 C6orf52Q5T4I8 152 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 MLIPQ5VWP3 458 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 SLC9B2Q86UD5 537 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 FAR1Q8WVX9 515 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 TP53INP1Q96A56 240 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 FBXL18Q96ME1 805 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PIGUQ9H490 435 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 RGS17Q9UGC6 210 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 TAC3Q9UHF0 121 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 TESMINQ9Y4I5 508 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 PIK3C2AO00443 1686 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 M0QX08 132 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 KDELR3O43731 214 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 IFNA6P05013 189 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 RPL10P27635 214 aaKnown RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 IL1R2P27930 398 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 MLLT6P55198 1093 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-215ENST00000496447 DPY19L1Q2PZI1 675 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 FBXO42Q6P3S6 717 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 OR2AJ1Q8NGZ0 328 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 TLL2Q9Y6L7 1015 aa12.86□□□□□ -0.35
PTPRF-215ENST00000496447 SNED1Q8TER0 1413 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 DUXAA6NLW8 204 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 FOXO6A8MYZ6 492 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 PEX12O00623 359 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 GNB5O14775 395 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 HCRTO43612 131 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 TGFB1P01137 390 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 MSL3P1P0C860 447 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 JAG1P78504 1218 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SMU1Q2TAY7 513 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 MS4A13Q5J8X5 152 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SLC29A4Q7RTT9 530 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ROPN1LQ96C74 230 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 HIST1H2AAQ96QV6 131 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF222Q9UK12 451 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 MED31Q9Y3C7 131 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 PCDHGA10Q9Y5H3 936 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 hCG_2039718K7EN88 272 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 MAGEA11P43364 429 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 BDKRB1P46663 353 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 RBM20Q5T481 1227 aaKnown RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 LCN1P1Q5VSP4 162 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 LRRC66Q68CR7 880 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SMARCD3Q6STE5 483 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SLC51AQ86UW1 340 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CCDC36Q8IYA8 594 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 DCAKDQ8WVC6 231 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 GTPBP3Q969Y2 492 aaKnown RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SERINC1Q9NRX5 453 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 LGALS13Q9UHV8 139 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CLEC4AQ9UMR7 237 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SNX7Q9UNH6 387 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 KCNK6Q9Y257 313 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 DGKBQ9Y6T7 804 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CAPN14A8MX76 684 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 FAM25EA8MYX2 175 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 S100A6P06703 90 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 AQP4P55087 323 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 TCEAL6Q6IPX3 200 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 TPRG1Q6ZUI0 275 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms