RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CORO1CQ9ULV4 474 aaPredicted RBP3.57□□□□□ -1.84
LINC01040-201ENST00000425048 VSIG4Q9Y279 399 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 ZNF256Q9Y2P7 627 aaPredicted RBP3.57□□□□□ -1.84
LINC01040-201ENST00000425048 PIAS3Q9Y6X2 628 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 KIF25-AS1Q9Y6Z4 181 aa3.57□□□□□ -1.84
LINC01040-201ENST00000425048 A0A1W2PR77 199 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 ZNF840PA6NDX5 716 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 SHISA7A6NL88 538 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 H0YAE9 185 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 HSPA8P11142 646 aaKnown RBP3.56□□□□□ -1.84
LINC01040-201ENST00000425048 ATP1A3P13637 1013 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 KLK2P20151 261 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 PPARGP37231 505 aaPredicted RBP3.56□□□□□ -1.84
LINC01040-201ENST00000425048 XGP55808 180 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 TAF10Q12962 218 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 ZNF74Q16587 644 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 SPDYCQ5MJ68 293 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 TMEM154Q6P9G4 183 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 BAIAP2L2Q6UXY1 529 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 CHMP1BQ7LBR1 199 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 CALML4Q96GE6 196 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 CHCHD5Q9BSY4 110 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 HOXD1Q9GZZ0 328 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 SERINC1Q9NRX5 453 aa3.56□□□□□ -1.84
LINC01040-201ENST00000425048 FAM207AQ9NSI2 230 aaPredicted RBP3.56□□□□□ -1.84
LINC01040-201ENST00000425048 LARSQ9P2J5 1176 aaKnown RBP3.56□□□□□ -1.84
LINC01040-201ENST00000425048 MED24O75448 989 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 CEACAM4O75871 244 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 PRKAR1AP10644 381 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 CSTF2P33240 577 aaKnown RBP eCLIP3.55□□□□□ -1.84
LINC01040-201ENST00000425048 LMAN1P49257 510 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 LYZP61626 148 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 CDK3Q00526 305 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 CRYMQ14894 314 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 SLC35D3Q5M8T2 416 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 ELFN2Q5R3F8 820 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 FIGLAQ6QHK4 219 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 HAUS6Q7Z4H7 955 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 NUDT13Q86X67 352 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 PHC2Q8IXK0 858 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 SMAP1Q8IYB5 467 aaPredicted RBP3.55□□□□□ -1.84
LINC01040-201ENST00000425048 CEP57L1Q8IYX8 460 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 KLHDC1Q8N7A1 406 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 OR11H4Q8NGC9 324 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 SLITRK2Q9H156 845 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 MUC13Q9H3R2 512 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 TNFRSF19Q9NS68 423 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 ANAPC11Q9NYG5 84 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 GTSE1Q9NYZ3 720 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 C19orf25Q9UFG5 118 aaPredicted RBP3.55□□□□□ -1.84
LINC01040-201ENST00000425048 STUB1Q9UNE7 303 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 PA2G4Q9UQ80 394 aaKnown RBP3.55□□□□□ -1.84
LINC01040-201ENST00000425048 NME7Q9Y5B8 376 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 STYXL1Q9Y6J8 313 aa3.55□□□□□ -1.84
LINC01040-201ENST00000425048 IGHV4-30-2A0A087WSY4 118 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 SLCO2B1O94956 709 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 OR2C1O95371 312 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 PRB2P02812 416 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 DARSP14868 501 aaKnown RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 GABRB1P18505 474 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 MNDAP41218 407 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 SUOXP51687 545 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 EIF4EBP2Q13542 120 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 RFTN1Q14699 578 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 PRR30Q53SZ7 412 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 FAM182AQ5T1J6 154 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 DMKNQ6E0U4 476 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 LCLAT1Q6UWP7 414 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 TMTC3Q6ZXV5 915 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 C9orf43Q8TAL5 461 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 LRRC59Q96AG4 307 aaKnown RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 CNRIP1Q96F85 164 aaPredicted RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 CEP295NLQ96MC4 621 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 NEK1Q96PY6 1258 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 SRSF8Q9BRL6 282 aaKnown RBP3.54□□□□□ -1.84
LINC01040-201ENST00000425048 OVOL2Q9BRP0 275 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 PARLQ9H300 379 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 HACL1Q9UJ83 578 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 TRIM17Q9Y577 477 aa3.54□□□□□ -1.84
LINC01040-201ENST00000425048 PCDH11YQ9BZA8 1340 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 A0A087WWV3 80 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 LRRC72A6NJI9 287 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 LRCH4O75427 683 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 GABRA5P31644 462 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 CLCN4P51793 760 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 LBX1P52954 281 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 MS4A18Q3C1V0 323 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 RSBN1Q5VWQ0 802 aaPredicted RBP3.53□□□□□ -1.84
LINC01040-201ENST00000425048 OLFML2AQ68BL7 652 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 UGT3A1Q6NUS8 523 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 TMPRSS11FQ6ZWK6 438 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 TIPARPQ7Z3E1 657 aaKnown RBP3.53□□□□□ -1.84
LINC01040-201ENST00000425048 ZNF597Q96LX8 424 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 MAP3K3Q99759 626 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 KCNK15Q9H427 330 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 TRPV4Q9HBA0 871 aa3.53□□□□□ -1.84
LINC01040-201ENST00000425048 THAP10Q9P2Z0 257 aaPredicted RBP3.53□□□□□ -1.84
LINC01040-201ENST00000425048 A0A0U1RQG5 324 aaPredicted RBP3.52□□□□□ -1.85
LINC01040-201ENST00000425048 TSPAN1O60635 241 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 CREG1O75629 220 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms