RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CRB2Q5IJ48 1285 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 FAM92BQ6ZTR7 304 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 IFNL1Q8IU54 200 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 GLB1L3Q8NCI6 653 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 SLC35A5Q9BS91 424 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 PCBD2Q9H0N5 130 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 CHMP1AQ9HD42 196 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 ZDHHC3Q9NYG2 299 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 SLC7A8Q9UHI5 535 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 MMP20O60882 483 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ENGP17813 658 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 XRCC1P18887 633 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 CCND3P30281 292 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 GKP32189 559 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 KHKP50053 298 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 CLCN4P51793 760 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 AKR1D1P51857 326 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 NFATC2Q13469 925 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 SLC39A4Q6P5W5 647 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 NANOGNBQ7Z5D8 188 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 SVOPLQ8N434 492 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 PHC3Q8NDX5 983 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 FAM46DQ8NEK8 389 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 OR9I1Q8NGQ6 314 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 SLC22A17Q8WUG5 538 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 POLR2J2Q9GZM3 115 aaKnown RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 RGS17Q9UGC6 210 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 FZD4Q9ULV1 537 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 CLIC1O00299 241 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 NDUFS4O43181 175 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 DIRAS1O95057 198 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 JUNP05412 331 aaKnown RBP11.21□□□□□ -0.61
USP53-201ENST00000274030 CCKBRP32239 447 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 MPIP34949 423 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 CCR3P51677 355 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 CRISP3P54108 245 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 PPP3R1P63098 170 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 PUM1Q14671 1186 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP53-201ENST00000274030 SYT16Q17RD7 645 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 SMU1Q2TAY7 513 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 SLC2A7Q6PXP3 512 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 TMEM203Q969S6 136 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 SUSD3Q96L08 255 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 MIPEPQ99797 713 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 LRRC3Q9BY71 257 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 TRIM2Q9C040 744 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 GPN1Q9HCN4 374 aaPredicted RBP11.21□□□□□ -0.61
USP53-201ENST00000274030 DAPL1A0PJW8 107 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 ANXA2P2A6NMY6 339 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 NFKBIEO00221 500 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 WRBO00258 174 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 ANXA2P07355 339 aaKnown RBP11.21□□□□□ -0.61
USP53-201ENST00000274030 PTNP21246 168 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 ARCN1P48444 511 aaKnown RBP11.21□□□□□ -0.61
USP53-201ENST00000274030 CCR8P51685 355 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 RFTN1Q14699 578 aaPredicted RBP11.21□□□□□ -0.61
USP53-201ENST00000274030 ZCCHC12Q6PEW1 402 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 NXPE1Q8N323 547 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 DEFB119Q8N690 84 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 FAM124BQ9H5Z6 455 aaPredicted RBP11.21□□□□□ -0.61
USP53-201ENST00000274030 IL1RAPQ9NPH3 570 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 DNAJB9Q9UBS3 223 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 PLAGL1Q9UM63 463 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 RWDD3Q9Y3V2 267 aa11.21□□□□□ -0.61
USP53-201ENST00000274030 DLX3O60479 287 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 C12orf42Q96LP6 360 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 SP140LQ9H930 580 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 GIMAP2Q9UG22 337 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 OAZ3Q9UMX2 235 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 TMEM98Q9Y2Y6 226 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 A0A1W2PQ72 361 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 ARVCFO00192 962 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 CNTN5O94779 1100 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 PAPSS2O95340 614 aaPredicted RBP11.21□□□□□ -0.62
USP53-201ENST00000274030 GATMP50440 423 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 OC90Q02509 493 aaPredicted RBP11.21□□□□□ -0.62
USP53-201ENST00000274030 DSC3Q14574 896 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 XKR4Q5GH76 650 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 PRAMEF14Q5SWL7 426 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 PRAMEF13Q5VWM6 474 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 ARMCX6Q7L4S7 300 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 OR10G2Q8NGC3 310 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 LRRC58Q96CX6 371 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 TMEM209Q96SK2 561 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 MED28Q9H204 178 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 EURLQ9NYK6 297 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 ATXN10Q9UBB4 475 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 KCNK6Q9Y257 313 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 GRIP1Q9Y3R0 1128 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 PLIN4Q96Q06 1357 aa11.21□□□□□ -0.62
USP53-201ENST00000274030 PRKD3O94806 890 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 UBXN7O94888 489 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 PNLIPRP1P54315 467 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 SP140Q13342 867 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 PDGFRLQ15198 375 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 CYP27C1Q4G0S4 372 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 SIPA1Q96FS4 1042 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 ZSWIM3Q96MP5 696 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 ANKHQ9HCJ1 492 aa11.2□□□□□ -0.62
USP53-201ENST00000274030 ZNF221Q9UK13 617 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms