RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SYVN1Q86TM6 617 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 SPPL2CQ8IUH8 684 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 SLC22A15Q8IZD6 547 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 NKAPQ8N5F7 415 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 EID2Q8N6I1 236 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 TMIEQ8NEW7 156 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 TRIB3Q96RU7 358 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 ELF4Q99607 663 aaPredicted RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 ECSITQ9BQ95 431 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 TBCDQ9BTW9 1192 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 CEP44Q9C0F1 390 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 IL17CQ9P0M4 197 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 NDUFAF1Q9Y375 327 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 IGLON5A6NGN9 336 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PLRG1O43660 514 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 FKBP6O75344 327 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PGM3O95394 542 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 WNT1P04628 370 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 MTHFD1P11586 935 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PCNAP12004 261 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 BPIP17213 487 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 CCR5P51681 352 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 BNIP3Q12983 259 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 CTSL3PQ5NE16 218 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 GDPD4Q6W3E5 623 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 TRIM74Q86UV6 250 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 GPR26Q8NDV2 337 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 DCUN1D1Q96GG9 259 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 BIRC8Q96P09 236 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 GBP5Q96PP8 586 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 RANBP9Q96S59 729 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 KLHL4Q9C0H6 718 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 VCXQ9H320 206 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 ACTR8Q9H981 624 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 FARSBQ9NSD9 589 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 SLAMF8Q9P0V8 285 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 RNF103-CHMP3A0A140T963 221 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PRAMEF26H0Y7S4 382 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 LZTS3O60299 673 aaPredicted RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 MMP20O60882 483 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 SEC22BO75396 215 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PGLSO95336 258 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 OGNP20774 298 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 TAS2R38P59533 333 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 RPL38P63173 70 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 TIAL1Q01085 375 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PPP1R8Q12972 351 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 LCP2Q13094 533 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 PHKG1Q16816 387 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 MTX3Q5HYI7 312 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 AARS2Q5JTZ9 985 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 IL23RQ5VWK5 629 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 RD3Q7Z3Z2 195 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 ENDOVQ8N8Q3 282 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 OR56A4Q8NGH8 313 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 C1orf216Q8TAB5 229 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 CXorf40AQ8TE69 158 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 LRTOMTQ8WZ04 291 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 KIAA1191Q96A73 305 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 MED8Q96G25 268 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 ATOH8Q96SQ7 321 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 CIB1Q99828 191 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 MCMBPQ9BTE3 642 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 DNAAF2Q9NVR5 837 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 POLG2Q9UHN1 485 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 MOSPD1Q9UJG1 213 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 COQ6Q9Y2Z9 468 aa8.44□□□□□ -1.06
VPS4B-201ENST00000238497 NYNRINQ9P2P1 1898 aaKnown RBP8.44□□□□□ -1.06
VPS4B-201ENST00000238497 VILLO15195 856 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 GSNP06396 782 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 FTH1P19P0C7X4 201 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CKMT2P17540 419 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CR2P20023 1033 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CTSKP43235 329 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 GRK6P43250 576 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 HK3P52790 923 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 MTTPP55157 894 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 YBX1P67809 324 aaKnown RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 DAB2P98082 770 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 IL1RL1Q01638 556 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CACNG1Q06432 222 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 FRG1Q14331 258 aaKnown RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ATP13A5Q4VNC0 1218 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ATP6AP1LQ52LC2 224 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ZNF805Q5CZA5 627 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 RNF111Q6ZNA4 994 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ZSWIM9Q86XI8 627 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 PCYOX1LQ8NBM8 494 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 OR10Q1Q8NGQ4 319 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CD200R1Q8TD46 325 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 FAR2Q96K12 515 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 TEX37Q96LM6 180 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 THUMPD3Q9BV44 507 aaKnown RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 SLC17A9Q9BYT1 436 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 TUBB1Q9H4B7 451 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CAAP1Q9H8G2 361 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 PREBQ9HCU5 417 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 FTSJ1Q9UET6 329 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 USP22Q9UPT9 525 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 PRORSD1PA6NEY8 169 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms