RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SNX6Q9UNH7 406 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ST14Q9Y5Y6 855 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 XIRP2A4UGR9 3374 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ZFC3H1O60293 1989 aaKnown RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 IGLV3-10A0A075B6K4 115 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ILVBLA1L0T0 632 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 FAM220BPB1ANY3 271 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 FXYD1O00168 92 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 CCL22O00626 93 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 SEC22BO75396 215 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 CAPN1P07384 714 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 EPB42P16452 691 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ITIH1P19827 911 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ARPP19P56211 112 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 YBX1P67809 324 aaKnown RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PURAQ00577 322 aaKnown RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PCBP2Q15366 365 aaKnown RBP eCLIP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 DPY19L1Q2PZI1 675 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PLA2G4EQ3MJ16 856 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 XKR7Q5GH72 579 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ZC3H12BQ5HYM0 836 aaKnown RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 C6orf141Q5SZD1 244 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 C10orf62Q5T681 223 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 RPS27LQ71UM5 84 aaKnown RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 SCD5Q86SK9 330 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ATCAYQ86WG3 371 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 NPAS4Q8IUM7 802 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 EPHX4Q8IUS5 362 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PARP8Q8N3A8 854 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PIK3C3Q8NEB9 887 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 BPIFB6Q8NFQ5 453 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 OR13C4Q8NGS5 318 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 NPLOC4Q8TAT6 608 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 TBC1D15Q8TC07 691 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 DNASE1L2Q92874 299 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 FUBP1Q96AE4 644 aaKnown RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PSKH2Q96QS6 385 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 SEPT5Q99719 369 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-214ENST00000637038 DGCR6LQ9BY27 220 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 FAM117AQ9C073 453 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 TOR3AQ9H497 397 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 PIF1Q9H611 641 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 LRTM1Q9HBL6 345 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 NECTIN3Q9NQS3 549 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM30AQ9NV96 361 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF639Q9UID6 485 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 CRLS1Q9UJA2 301 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 NUDT5Q9UKK9 219 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 ACAD8Q9UKU7 415 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 SIT1Q9Y3P8 196 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 RAI2Q9Y5P3 530 aa3.9□□□□□ -1.79
SCN1A-214ENST00000637038 A0A0B4J203 849 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PNMA8CA0A1B0GUJ8 204 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TCRBV5S2A0A599 114 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PLOD2O00469 737 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ACSL4O60488 711 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 FAM20BO75063 409 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SEC14L2O76054 403 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ANGPTL1O95841 491 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 EOMESO95936 686 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ASGR1P07306 291 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ANXA5P08758 320 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PRR35P0CG20 571 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DDX5P17844 614 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 IGFBP5P24593 272 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PTX3P26022 381 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OXTRP30559 389 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ATP5C1P36542 298 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 EIF2B2P49770 351 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF140P52738 457 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PGGT1BP53609 377 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 EMP3P54852 163 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TWF1Q12792 350 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DDR2Q16832 855 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 INO80DQ53TQ3 878 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ARMC12Q5T9G4 340 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 FIP1L1Q6UN15 594 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM184AQ6ZMB5 413 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DCDC5Q6ZRR9 648 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 USP51Q70EK9 711 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CHST9Q7L1S5 443 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SLCO6A1Q86UG4 719 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 P2RY8Q86VZ1 359 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 RALGPS2Q86X27 583 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 C1orf210Q8IVY1 113 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KBTBD8Q8NFY9 601 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OR52E4Q8NGH9 312 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OR10T2Q8NGX3 314 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MYDGFQ969H8 173 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PLD4Q96BZ4 506 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PDLIM5Q96HC4 596 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MUS81Q96NY9 551 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 NSUN5Q96P11 429 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 OR52E6Q96RD3 313 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KCNA7Q96RP8 456 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MGME1Q9BQP7 344 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 APOL5Q9BWW9 433 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ELOVL6Q9H5J4 265 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 C11orf16Q9NQ32 467 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms