RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	CLOCK	O15516	846 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	CRCP	O75575	148 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ALB	P02768	609 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	CHRM5	P08912	532 aa	Predicted RBP	11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	IRF1	P10914	325 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	GPX3	P22352	226 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	GDI2	P50395	445 aa	Known RBP	11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	POU4F1	Q01851	419 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PON2	Q15165	354 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PAGE3	Q5JUK9	113 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ZNF678	Q5SXM1	525 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	MARC1	Q5VT66	337 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	AFMID	Q63HM1	303 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TTC23L	Q6PF05	361 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	STX12	Q86Y82	276 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SNX29P2	Q8IUI4	249 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	CILP2	Q8IUL8	1156 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	KLHDC8B	Q8IXV7	354 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TFAP2C	Q92754	450 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	IMP4	Q96G21	291 aa	Known RBP	11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SEMA3C	Q99985	751 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TCF25	Q9BQ70	676 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	EFHD1	Q9BUP0	239 aa		11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	EML4	Q9HC35	981 aa	Known RBP	11.36	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	OR6C75	A6NL08	312 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SUPT3H	B4E1H0	165 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PRRG1	O14668	218 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ARPC2	O15144	300 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SSX5	O60225	188 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TLR5	O60602	858 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	BMP10	O95393	424 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	S1PR4	O95977	384 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ATXN1L	P0C7T5	689 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ZNF182	P17025	639 aa	Predicted RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PAM	P19021	973 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	RGR	P47804	291 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	CDK9	P50750	372 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ERV3-1	Q14264	604 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TIGD2	Q4W5G0	525 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	CRTC2	Q53ET0	693 aa	Predicted RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	BRMS1L	Q5PSV4	323 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	UGT3A1	Q6NUS8	523 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ZNF683	Q8IZ20	524 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	AVL9	Q8NBF6	648 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ARRDC2	Q8TBH0	407 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FANK1	Q8TC84	345 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FUBP3	Q96I24	572 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	IGSF21	Q96ID5	467 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	RNF145	Q96MT1	663 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SLC25A51	Q9H1U9	297 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	CXorf21	Q9HAI6	301 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	INTS7	Q9NVH2	962 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	MBD2	Q9UBB5	411 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	NLRC5	Q86WI3	1866 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063		A0A087X1B8	175 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SERPINB7	O75635	380 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	GOT2	P00505	430 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FMO4	P31512	558 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	POLR2I	P36954	125 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	UFM1	P61960	85 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	EEF1A1	P68104	462 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PPP2R2B	Q00005	443 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	EEF1A2	Q05639	463 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TNK2	Q07912	1038 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	MERTK	Q12866	999 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ELAVL2	Q12926	359 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	NFYC	Q13952	458 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SPCS2	Q15005	226 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ZNF674	Q2M3X9	581 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	AARS2	Q5JTZ9	985 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	EEF1A1P5	Q5VTE0	462 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FAM122C	Q6P4D5	195 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	RHOU	Q7L0Q8	258 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	HS3ST5	Q8IZT8	346 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	BPIFB6	Q8NFQ5	453 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	OR7D4	Q8NG98	312 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	OR6S1	Q8NH40	331 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	GIPC3	Q8TF64	312 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SLC22A18	Q96BI1	424 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SERPINB11	Q96P15	392 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	VN1R3	Q9BXE9	311 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	C11orf49	Q9H6J7	331 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TLR8	Q9NR97	1041 aa	Known RBP	11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	NSMCE4A	Q9NXX6	385 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TBX21	Q9UL17	535 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ASB1	Q9Y576	335 aa		11.35	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063		H7C4K7	107 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FXYD1	O00168	92 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FGF10	O15520	208 aa	Predicted RBP	11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	LDB2	O43679	373 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	FKBP9	O95302	570 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	VNN2	O95498	520 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	COL6A2	P12110	1019 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	SLC6A2	P23975	617 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PIK3CG	P48736	1102 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	NKX2-5	P52952	324 aa	Predicted RBP	11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	GNA12	Q03113	381 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TRAF2	Q12933	501 aa		11.34	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	11.34	□□□□□ -0.59	2e-6	■□□□□ 11.2

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms