RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SLC16A5O15375 505 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SEC24DO94855 1032 aaPredicted RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 PRPH2P23942 346 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 CLDN8P56748 225 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 PHC1P78364 1004 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SP140Q13342 867 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 RBBP5Q15291 538 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 PTCHD3Q3KNS1 767 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 TMEM214Q6NUQ4 689 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 NEK5Q6P3R8 708 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 ADIPOR2Q86V24 386 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 ANKRD13BQ86YJ7 626 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 FAM86B1Q8N7N1 296 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 L3MBTL4Q8NA19 623 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 OR2A12Q8NGT7 310 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SKA2Q8WVK7 121 aaPredicted RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 P2RY13Q9BPV8 354 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 PAIP1Q9H074 479 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 ELOVL6Q9H5J4 265 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 CARS2Q9HA77 564 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 HCFC1R1Q9NWW0 138 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 ADGRE2Q9UHX3 823 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SNX6Q9UNH7 406 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 DLGAP4Q9Y2H0 992 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 NPIPB8E9PQR5 432 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 H0YAE9 185 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ERN1O75460 977 aaKnown RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 SCELO95171 688 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 LINC00271P0C7V0 271 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PRPS2P11908 318 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ZNF30P17039 623 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PCSK6P29122 969 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 CDK9P50750 372 aaKnown RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 ALDH3A2P51648 485 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 BOP1Q14137 746 aaKnown RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 LRIF1Q5T3J3 769 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 BRAT1Q6PJG6 821 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 SERPINA13PQ6UXR4 307 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 NECAB2Q7Z6G3 386 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PLPP6Q8IY26 295 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 OFCC1Q8IZS5 231 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 FAM9CQ8IZT9 166 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 IRF7Q92985 503 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 TMBIM1Q969X1 311 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 BEGAINQ9BUH8 593 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 BBS2Q9BXC9 721 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 OSBPL6Q9BZF3 934 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 KCNH6Q9H252 994 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 SOX17Q9H6I2 414 aaPredicted RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 KAT8Q9H7Z6 458 aaKnown RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 SERHLQ9NQF3 203 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 SLC6A13Q9NSD5 602 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 INVSQ9Y283 1065 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 MAN2B2Q9Y2E5 1009 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PCDHB14Q9Y5E9 798 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 H0Y858 1186 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 CXCR6O00574 342 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 KPNA5O15131 536 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PRAMEF4O60810 478 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 TIMP1P01033 207 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ASLP04424 464 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ALPLP05186 524 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ACRP10323 421 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PCNAP12004 261 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PCSK2P16519 638 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 CYP2A7P20853 494 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 MTHFRP42898 656 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 NEK2P51955 445 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ARSFP54793 590 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 AP1S2P56377 157 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 DMC1Q14565 340 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 NKG7Q16617 165 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 C11orf91Q3C1V1 193 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 GTDC1Q4AE62 458 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 TMEM259Q4ZIN3 620 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 SLC44A4Q53GD3 710 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 OTUD3Q5T2D3 398 aaPredicted RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 PRAMEF9Q5VWM5 478 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ATG9BQ674R7 924 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 ENPP6Q6UWR7 440 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 NEK10Q6ZWH5 1172 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 CALHM3Q86XJ0 350 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 BEND7Q8N7W2 519 aaPredicted RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 KLHL23Q8NBE8 558 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 FBXO30Q8TB52 745 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 SCAMP4Q969E2 229 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 PYCR2Q96C36 320 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 TCEAL4Q96EI5 215 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 CMTM7Q96FZ5 175 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 HIC2Q96JB3 615 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 TBCDQ9BTW9 1192 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 CHCHD3Q9NX63 227 aaKnown RBP9.82□□□□□ -0.84
VPS53-220ENST00000576149 LIMD1Q9UGP4 676 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 SLC22A14Q9Y267 594 aa9.82□□□□□ -0.84
VPS53-220ENST00000576149 A0A096LPI6 279 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 SERTM1A2A2V5 107 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 PABPN1LA6NDY0 278 aaKnown RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 SGTAO43765 313 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 MTX2O75431 263 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TRMUO75648 421 aaKnown RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms