RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CD22P20273 847 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CBSP35520 551 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 KRT6CP48668 564 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 PTPN5P54829 565 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 PFN3P60673 137 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 TMEM115Q12893 351 aaPredicted RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 NAE1Q13564 534 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 SYTL3Q4VX76 610 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 USP39Q53GS9 565 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 HENMT1Q5T8I9 393 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 ANKRD26P1Q6NSI1 321 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 LIPIQ6XZB0 460 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 MSRB3Q8IXL7 192 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 METTL25Q8N6Q8 603 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 TRPV3Q8NET8 790 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 FBXO30Q8TB52 745 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 MAGEE2Q8TD90 523 aaPredicted RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 ASZ1Q8WWH4 475 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 SMG7Q92540 1137 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 DUS3LQ96G46 650 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 ZNF583Q96ND8 569 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CHID1Q9BWS9 393 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 ANAPC2Q9UJX6 822 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 NUMA1Q14980 2115 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CFAP99D6REC4 459 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 E7EQ34 232 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 DLGAP1O14490 977 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 EI24O14681 340 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 HNRNPRO43390 633 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 TFAP2AP05549 437 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CISD3P0C7P0 127 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 BMP2P12643 396 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 DDX6P26196 483 aaKnown RBP eCLIP10.34□□□□□ -0.752e-8■■■■□ 19.3
CUX1-217ENST00000558836 IST1P53990 364 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 PWP1Q13610 501 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 ZNF284Q2VY69 593 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 TBPL2Q6SJ96 375 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CHERPQ8IWX8 916 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 DPP10Q8N608 796 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 FAM47BQ8NA70 645 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 UBTD2Q8WUN7 234 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 NSMCE2Q96MF7 247 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 NRTNQ99748 197 aa10.34□□□□□ -0.75
CUX1-217ENST00000558836 CARS2Q9HA77 564 aaKnown RBP10.34□□□□□ -0.75
CUX1-217ENST00000558836 CCDC160A6NGH7 325 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 GFYI3L273 518 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 MMP20O60882 483 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 C8GP07360 202 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CYP2A7P20853 494 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CDKN2CP42773 168 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 SLC6A12P48065 614 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 LBX1P52954 281 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CDH15P55291 814 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 EEFSECP57772 596 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 ST8SIA6P61647 398 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 LAPTM5Q13571 262 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CNPY1Q3B7I2 92 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 XKR6Q5GH73 641 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 NHSL2Q5HYW2 709 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 KRT80Q6KB66 452 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 ENPP6Q6UWR7 440 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CYP2U1Q7Z449 544 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 PTRH1Q86Y79 214 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 OFCC1Q8IZS5 231 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 ANKFN1Q8N957 763 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 VN1R2Q8NFZ6 395 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 BTN2A2Q8WVV5 523 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CYGBQ8WWM9 190 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 TMEM159Q96B96 161 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 NMD3Q96D46 503 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 SMOXQ9NWM0 555 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 SLC8A2Q9UPR5 921 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 PCDHB14Q9Y5E9 798 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 SLC16A8O95907 504 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 ZNF23P17027 643 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 ZNF30P17039 623 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 MAP4P27816 1152 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 MRPL19P49406 292 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 CCT8P50990 548 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 RPS14P62263 151 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 IRF8Q02556 426 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 FNDC3BQ53EP0 1204 aaKnown RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 PPP4R4Q6NUP7 873 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 TECPR1Q7Z6L1 1165 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 CFAP206Q8IYR0 622 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 C2orf73Q8N5S3 287 aaPredicted RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 SPDYE1Q8NFV5 336 aaPredicted RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 OR2T12Q8NG77 320 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 SP7Q8TDD2 431 aaPredicted RBP10.33□□□□□ -0.76
CUX1-217ENST00000558836 GLYATL1Q969I3 302 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 FBXL20Q96IG2 436 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 SLC2A11Q9BYW1 496 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 DNAJC11Q9NVH1 559 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 GPRC5BQ9NZH0 403 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 GULP1Q9UBP9 304 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 PPT2Q9UMR5 302 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 KNL1Q8NG31 2342 aa10.33□□□□□ -0.76
CUX1-217ENST00000558836 MYCLP1P12525 358 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 PFKLP17858 780 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 SDC1P18827 310 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms