RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ZNF490Q9ULM2 529 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-231ENST00000557433 PSMB9P28065 219 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 FCGRTP55899 365 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 RPS14P62263 151 aaKnown RBP15.9■□□□□ 0.14
SHMT2-231ENST00000557433 KRR1Q13601 381 aaKnown RBP15.9■□□□□ 0.14
SHMT2-231ENST00000557433 MAD2L1BPQ15013 274 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-231ENST00000557433 DEPDC1Q5TB30 811 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 CYP4Z1Q86W10 505 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 RGL4Q8IZJ4 473 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 RBFAQ8N0V3 343 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 ULK4Q96C45 1275 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 DSN1Q9H410 356 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 RIBC2Q9H4K1 309 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 IL17CQ9P0M4 197 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 KLQ9UEF7 1012 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 PMF1-BGLAPU3KQ54 211 aa15.9■□□□□ 0.14
SHMT2-231ENST00000557433 SCN10AQ9Y5Y9 1956 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 NPIPB8E9PQR5 432 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 H3BNC9 293 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 TOR1BO14657 336 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 AREL1O15033 823 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 FAM20BO75063 409 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 IGHA2P01877 340 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 MT-ND2P03891 347 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 BCKDHAP12694 445 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 EPB42P16452 691 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 PRPH2P23942 346 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 FMO3P31513 532 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 EIF2DP41214 584 aaKnown RBP15.89■□□□□ 0.13
SHMT2-231ENST00000557433 CLK3P49761 638 aaKnown RBP15.89■□□□□ 0.13
SHMT2-231ENST00000557433 VBP1P61758 197 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 NDUFA5Q16718 116 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 KIAA1614Q5VZ46 1190 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 ANKRD34AQ69YU3 496 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 ABI1Q8IZP0 508 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 EFHBQ8N7U6 833 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 TTC29Q8NA56 475 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-231ENST00000557433 ZNF540Q8NDQ6 660 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 KLHDC9Q8NEP7 349 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 STARD8Q92502 1023 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 HPS1Q92902 700 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 EGFL8Q99944 293 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 BTBD2Q9BX70 525 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 CEP44Q9C0F1 390 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 SERHLQ9NQF3 203 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 GREB1Q4ZG55 1949 aa15.89■□□□□ 0.13
SHMT2-231ENST00000557433 OR2A25A4D2G3 310 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 EVPLLA8MZ36 301 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 TLR5O60602 858 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 UPK1BO75841 260 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 EOMESO95936 686 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 RHOCP08134 193 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 PABPC1P11940 636 aaKnown RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 HMGCLP35914 325 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 THPOP40225 353 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 PPP3CCP48454 512 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 MASP1P48740 699 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 TRPC1P48995 793 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 DAPP51397 102 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 FKBP1BP68106 108 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 PHC1P78364 1004 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 AAK1Q2M2I8 961 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 C18orf21Q32NC0 220 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 INAVAQ3KP66 663 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 GNASQ5JWF2 1037 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 SUSD1Q6UWL2 747 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 DNAJC14Q6Y2X3 702 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 SLC38A4Q969I6 547 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ZHX1-C8orf76Q96EF9 292 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 TXNDC15Q96J42 360 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 SIGLEC11Q96RL6 698 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 CORO1BQ9BR76 489 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 KLHL25Q9H0H3 589 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 TNKS2Q9H2K2 1166 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ZFP14Q9HCL3 533 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ELOVL2Q9NXB9 296 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ZFP37Q9Y6Q3 630 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 MN1Q10571 1320 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 EFCAB9A8MZ26 197 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 F8W810 466 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 FABP3P05413 133 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 S100A1P23297 94 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 MAP2K4P45985 399 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ZNF177Q13360 481 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 GGTA1PQ4G0N0 100 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 CTXN3Q4LDR2 81 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 NCEH1Q6PIU2 408 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ANKRD12Q6UB98 2062 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ZNF783Q6ZMS7 281 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 SLC22A16Q86VW1 577 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 PHACTR4Q8IZ21 702 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 CFAP52Q8N1V2 620 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 KRTCAP2Q8N6L1 136 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 MCFD2Q8NI22 146 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 ITPAQ9BY32 194 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 CIPCQ9C0C6 399 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 MOV10Q9HCE1 1003 aaKnown RBP15.88■□□□□ 0.13
SHMT2-231ENST00000557433 KLHL42Q9P2K6 505 aa15.88■□□□□ 0.13
SHMT2-231ENST00000557433 DNMT3LQ9UJW3 386 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms