RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PRNPP04156 253 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 NAT1P18440 290 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF10P21506 573 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 GSTM2P28161 218 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 POLR2JP52435 117 aaKnown RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 PPP5CP53041 499 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 EIF2B5Q13144 721 aaKnown RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 MEP1AQ16819 746 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 UBE2UQ5VVX9 321 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CFAP206Q8IYR0 622 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 TMBIM1Q969X1 311 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SLC45A3Q96JT2 553 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 ZSCAN5AQ9BUG6 496 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 TDRD1Q9BXT4 1180 aaKnown RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SLC2A6Q9UGQ3 507 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SLC13A2Q13183 592 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 ADGRF1Q5T601 910 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 AGAP7PQ5VUJ5 663 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 AGMOQ6ZNB7 445 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 RASSF6Q6ZTQ3 369 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CARM1Q86X55 608 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 PPM1MQ96MI6 270 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 DNAJC11Q9NVH1 559 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SSR3Q9UNL2 185 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 COL2A1P02458 1487 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 MTMR11A4FU01 709 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 PLOD3O60568 738 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CNTN5O94779 1100 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 BMP2P12643 396 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 MAT2AP31153 395 aaKnown RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 HTR2BP41595 481 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 TAF1AQ15573 450 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 ZSWIM7Q19AV6 140 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CCBE1Q6UXH8 406 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CDK20Q8IZL9 346 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SMOC2Q9H3U7 446 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CYTH4Q9UIA0 394 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 RPS6KA6Q9UK32 745 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 GSTK1Q9Y2Q3 226 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SAMHD1Q9Y3Z3 626 aaKnown RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 OR4F21O95013 312 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SNAP29O95721 258 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 PTTG1O95997 202 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 KIAA0930Q6ICG6 404 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CAPN13Q6MZZ7 669 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-213ENST00000514442 CHMP1BQ7LBR1 199 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 TMEM40Q8WWA1 233 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 KLK6Q92876 244 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SIPA1Q96FS4 1042 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 NPY6RQ99463 290 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SLC29A1Q99808 456 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 HSFX1Q9UBD0 423 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 OGDHLQ9ULD0 1010 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 SLC7A4O43246 635 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SCRN3Q0VDG4 424 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 ZDHHC20Q5W0Z9 365 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 WDTC1Q8N5D0 677 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 OR5K1Q8NHB7 308 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 FAIM2Q9BWQ8 316 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 LHPPQ9H008 270 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SMG9Q9H0W8 520 aaKnown RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 CLN6Q9NWW5 311 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 ATPIF1Q9UII2 106 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SCML2Q9UQR0 700 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 MEIS3P2A8K0S8 358 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 CYP11A1P05108 521 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF865P0CJ78 1059 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SRP54P61011 504 aaKnown RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 MAMDC4Q6UXC1 1216 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 TFAP2CQ92754 450 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 TTYH2Q9BSA4 534 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 ITPAQ9BY32 194 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SEZ6LQ9BYH1 1024 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 ANKRD34BA5PLL1 514 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 KMOO15229 486 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SLC10A3P09131 477 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 IL7P13232 177 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 TLX1P31314 330 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 GJA5P36382 358 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 UPP1Q16831 310 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 GPAT3Q53EU6 434 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SIRPB2Q5JXA9 342 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 IKBIPQ70UQ0 350 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 DCP2Q8IU60 420 aaKnown RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF296Q8WUU4 475 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 C11orf84Q9BUA3 381 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 LRTM1Q9HBL6 345 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 NECTIN3Q9NQS3 549 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 PHPT1Q9NRX4 125 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 MIOSQ9NXC5 875 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 GRIP1Q9Y3R0 1128 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 PRSS51A0A1B0GVH4 220 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 PER2O15055 1255 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 CHRNA1P02708 482 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 EEFSECP57772 596 aaKnown RBP12.87□□□□□ -0.35
TCOF1-213ENST00000514442 CSNK2BP67870 215 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 SERINC5Q86VE9 423 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 C17orf64Q86WR6 236 aa12.87□□□□□ -0.35
TCOF1-213ENST00000514442 PHYKPLQ8IUZ5 450 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms