RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KLHL9Q9P2J3 617 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 B3GAT1Q9P2W7 334 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 DUSP12Q9UNI6 340 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 ZMYM2Q9UBW7 1377 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 ATAD2BQ9ULI0 1458 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 PTPRCP08575 1304 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 SMIM35A0A1B0GVV1 85 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 BECN2A8MW95 431 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 GPR137BO60478 399 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 PRDM1O75626 825 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 C1QL1O75973 258 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 CXCL14O95715 111 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 TPM2P07951 284 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 KRT19P08727 400 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 EPCAMP16422 314 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 CORO1AP31146 461 aaKnown RBP4.44□□□□□ -1.7
VPS13A-212ENST00000493341 IER3P46695 156 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 RFX5P48382 616 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-212ENST00000493341 MXI1P50539 228 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 RASSF2P50749 326 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 EFEMP1Q12805 493 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 GRTP1Q5TC63 336 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 FAM46CQ5VWP2 391 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 FAM109BQ6ICB4 259 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-212ENST00000493341 RAD9BQ6WBX8 426 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 ANKRD46Q86W74 232 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 ADGRG3Q86Y34 549 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 TMEM199Q8N511 208 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 CHURC1Q8WUH1 139 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 CKAP2Q8WWK9 683 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 TMEM186Q96B77 213 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 EPSTI1Q96J88 318 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 MYADMQ96S97 322 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 BTBD10Q9BSF8 475 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 DDX47Q9H0S4 455 aaKnown RBP4.44□□□□□ -1.7
VPS13A-212ENST00000493341 SLC35D1Q9NTN3 355 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 NDUFA13Q9P0J0 144 aa4.44□□□□□ -1.7
VPS13A-212ENST00000493341 FAM205AQ6ZU69 1335 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ARHGAP42A6NI28 874 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 KPNA7A9QM74 516 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 PRSS46E5RG02 174 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 VWA5AO00534 786 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 RPS6KA5O75582 802 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 WISP2O76076 250 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 OR6B1O95007 311 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 HAPLN1P10915 354 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 CPA3P15088 417 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 LMO1P25800 156 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ACAA2P42765 397 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 IFNAR2P48551 515 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 MMP15P51511 669 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 SRP54P61011 504 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ARHGAP1Q07960 439 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FOXF2Q12947 444 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 CEBPEQ15744 281 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 KRTAP19-4Q3LI73 84 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 RAB6CQ53S08 254 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 PSRC1Q6PGN9 363 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 KDELC1Q6UW63 502 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 MEX3DQ86XN8 651 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 KRTAP19-1Q8IUB9 90 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 TMEM126BQ8IUX1 230 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 C1orf87Q8N0U7 546 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FBXW8Q8N3Y1 598 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FIG4Q92562 907 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 MRPL38Q96DV4 380 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 QTRT1Q9BXR0 403 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ACPTQ9BZG2 426 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 RAB6CQ9H0N0 254 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 GPN1Q9HCN4 374 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 KRCC1Q9NPI7 259 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 UBQLN2Q9UHD9 624 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 RUVBL2Q9Y230 463 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ILVBLA1L0T0 632 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 GOLGA6L9A6NEM1 432 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 DIRAS3O95661 229 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 LDLRP01130 860 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 IGLV2-14P01704 120 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FGF2P09038 288 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 NCF1P14598 390 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 NR1D1P20393 614 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 CDKN1AP38936 164 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ASMTP46597 345 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 MAT1AQ00266 395 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ILF2Q12905 390 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 PPP1R8Q12972 351 aaKnown RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 NPTX1Q15818 432 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FSCBQ5H9T9 825 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 C11orf63Q6NUN7 778 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 MACC1Q6ZN28 852 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ASPGQ86U10 573 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 TMEM185AQ8NFB2 350 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FBXO30Q8TB52 745 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 RNF128Q8TEB7 428 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 PYCR2Q96C36 320 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 OXNAD1Q96HP4 312 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 FAM84BQ96KN1 310 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-212ENST00000493341 C17orf62Q9BQA9 187 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 ZNF577Q9BSK1 485 aa4.43□□□□□ -1.7
VPS13A-212ENST00000493341 CDK19Q9BWU1 502 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms