RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZDHHC1Q8WTX9 485 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 PIGKQ92643 395 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 CAMK1GQ96NX5 476 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 TMEM79Q9BSE2 394 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 HGH1Q9BTY7 390 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 SGPP1Q9BX95 441 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 NUSAP1Q9BXS6 441 aaKnown RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 TRIM55Q9BYV6 548 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 PITHD1Q9GZP4 211 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 EHD1Q9H4M9 534 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 CAPN10Q9HC96 672 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 CCDC177Q9NQR7 707 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 PRDM8Q9NQV8 689 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 IMP3Q9NV31 184 aaKnown RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 MRGBPQ9NV56 204 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 DNAJC11Q9NVH1 559 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 KLF15Q9UIH9 416 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 PSMD13Q9UNM6 376 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ENTPD2Q9Y5L3 495 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ST14Q9Y5Y6 855 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 KCNE2Q9Y6J6 123 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 SLCO1B1Q9Y6L6 691 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 A0A1B0GTQ1 180 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TRPC5OSA6NMA1 111 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 E7ENX8 843 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 MATN2O00339 956 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CLGNO14967 610 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 SCAMP1O15126 338 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ZW10O43264 779 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CCNT2O60583 730 aaKnown RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 CCNDBP1O95273 360 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CHEK2O96017 543 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 VIPP01282 170 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ZNF883P0CG24 379 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ALPPL2P10696 532 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ALOX15P16050 662 aaPredicted RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 PKLRP30613 574 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 SLC19A1P41440 591 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CASP2P42575 452 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 BDKRB1P46663 353 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 HSPA7P48741 367 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 UBE2IP63279 158 aaKnown RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 IRX1P78414 480 aaPredicted RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 ABATP80404 500 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CBX1P83916 185 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TAP2Q03519 686 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 SRSF5Q13243 272 aaKnown RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 E2F2Q14209 437 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 GRB7Q14451 532 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TBCCQ15814 346 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 KIF19Q2TAC6 998 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 PTCHD3Q3KNS1 767 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 LIPJQ5W064 366 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TTC19Q6DKK2 380 aaPredicted RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 LAIR1Q6GTX8 287 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 KLHL35Q6PF15 583 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 LCTLQ6UWM7 567 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ZCCHC23Q6ZST2 131 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 GOLGA7Q7Z5G4 137 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CUZD1Q86UP6 607 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 C17orf82Q86X59 251 aaPredicted RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 SYTL1Q8IYJ3 562 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 LRRC34Q8IZ02 419 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CLYBLQ8N0X4 340 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 FAM46DQ8NEK8 389 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CCL4L1Q8NHW4 92 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 LMX1AQ8TE12 382 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ZNF480Q8WV37 535 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 CCT8L2Q96SF2 557 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 SORT1Q99523 831 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 MENTQ9BUN1 341 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TWSG1Q9GZX9 223 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 EPB41L1Q9H4G0 881 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 SLC40A1Q9NP59 571 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 C11orf16Q9NQ32 467 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TMEM74BQ9NUR3 256 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 FGFR1OP2Q9NVK5 253 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 NLGN3Q9NZ94 848 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 KLHL14Q9P2G3 628 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 ZNF624Q9P2J8 865 aaPredicted RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 CPNE7Q9UBL6 633 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TRPS1Q9UHF7 1281 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TSR3Q9UJK0 312 aaKnown RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 PLEKHM1Q9Y4G2 1056 aa9.86□□□□□ -0.83
USP39-215ENST00000481409 TP53BP1Q12888 1972 aaPredicted RBP9.86□□□□□ -0.83
USP39-215ENST00000481409 ZDBF2Q9HCK1 2354 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 LILRA5A6NI73 299 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 ARHGAP33O14559 1287 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 ITM2AO43736 263 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 RRP9O43818 475 aaKnown RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 FOXD2O60548 495 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 WDR47O94967 919 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 SIX3O95343 332 aaPredicted RBP9.85□□□□□ -0.83
USP39-215ENST00000481409 UROSP10746 265 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 GNAZP19086 355 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 DRD4P21917 467 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 HNF4AP41235 474 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 AGTR2P50052 363 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 CCT8P50990 548 aa9.85□□□□□ -0.83
USP39-215ENST00000481409 CCNG1P51959 295 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms